1. MsBackendMetaboLights
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README.md
# Retrieve Mass Spectrometry Data from MetaboLights [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/MsBackendMetaboLights/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/MsBackendMetaboLights/actions?query=workflow%3AR-CMD-check-bioc) [![codecov](https://codecov.io/gh/rformassspectrometry/MsBackendMetaboLights/graph/badge.svg?token=jpxt7OlA2k)](https://codecov.io/gh/rformassspectrometry/MsBackendMetaboLights) [![:name status badge](https://rformassspectrometry.r-universe.dev/badges/:name)](https://rformassspectrometry.r-universe.dev/) [![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0) This repository provides a *backend* for [Spectra](https://github.com/RforMassSpectrometry/Spectra) objects that represents and retrieves mass spectrometry (MS) data directly from metabolomics experiments deposited at the public [MetaboLights](https://www.ebi.ac.uk/metabolights/) repository. Mass spectrometry data files of an experiment are downloaded and cached locally using the [BiocFileCache](https://bioconductor.org/packages/BiocFileCache) package. # Installation The package can be installed with ```r install.packages("BiocManager") BiocManager::install("RforMassSpectrometry/MsBackendMetaboLights") ``` # Contributions Contributions are highly welcome and should follow the [contribution guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions). Also, please check the coding style guidelines in the [RforMassSpectrometry vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).