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README.md
# Mass Spectrometry Data Backend for MassBank Files [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/MsBackendMassbank/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/MsBackendMassbank/actions?query=workflow%3AR-CMD-check-bioc) [![codecov](https://codecov.io/gh/rformassspectrometry/MsBackendMassbank/branch/main/graph/badge.svg?token=OZ4Z5VN50J)](https://codecov.io/gh/rformassspectrometry/MsBackendMassbank) [![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0) [![years in bioc](http://bioconductor.org/shields/years-in-bioc/MsBackendMassbank.svg)](https://bioconductor.org/packages/release/bioc/html/MsBackendMassbank.html) [![Ranking by downloads](http://bioconductor.org/shields/downloads/release/MsBackendMassbank.svg)](https://bioconductor.org/packages/stats/bioc/MsBackendMassbank/) [![build release](http://bioconductor.org/shields/build/release/bioc/MsBackendMassbank.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/MsBackendMassbank/) [![build devel](http://bioconductor.org/shields/build/devel/bioc/MsBackendMassbank.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/MsBackendMassbank/) The `MsBackendMassbank` package provides functionality to import and handle MS/MS spectrum data from [Massbank](https://github.com/MassBank/MassBank-data) files or to directly access a MassBank SQL database. The package defines the `MsBackendMassbank` and `MsBackendMassbankSql` backends which can be used to import and use MS2 spectrum data from mgf files respectively MySQL databases with the [Spectra](https://github.com/rformassspectrometry/Spectra) R package. For more information see the package [homepage](https://rformassspectrometry.github.io/MsBackendMassbank). # Installation The package can be installed with ```r install.packages("BiocManager") BiocManager::install("MsBackendMassbank") ``` # Contributions Contributions are highly welcome and should follow the [contribution guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions). Also, please check the coding style guidelines in the [RforMassSpectrometry vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).