October 24, 2018
View5da060a

improved docs for query method

paul-shannon authored on 24/10/2018 19:02:56
October 18, 2018
View4b66948

big speedup of associateTranscriptionFactors method, exploiting duplicate motifs

paul-shannon authored on 18/10/2018 14:18:37
June 3, 2018
View48c3af4

motif/tf mapping now includes the 'both' option, tfclass and motifdb. motifStack plotting added

paul-shannon authored on 03/06/2018 18:31:01
May 23, 2018
View9535d30

motifToGene fix: now combined empty source table with populated table

paul-shannon authored on 23/05/2018 18:32:17
May 18, 2018
Viewfda2dea

associateTranscriptionFactors greatly simplified, builds upon motifToGene

paul-shannon authored on 18/05/2018 23:22:10
Viewaaf4e1a

motifToGene refactored, now suuports c('motifDb', tfClass') sources

paul-shannon authored on 18/05/2018 22:05:19
May 10, 2018
View3cb31fd

added query2(mdb, andTerms, orTerms=c(), notTerms=c())

paul-shannon authored on 10/05/2018 23:52:12
February 2, 2018
View68ba7eb

motifToGene and geneToMotif now guard against emtpy tables, ignore.cae option added

paul-shannon authored on 02/02/2018 00:04:51
October 4, 2017
View4acf0d7

documentation for geneToMotif, motifToGene, associateT...

paul-shannon authored on 04/10/2017 19:49:25
October 3, 2017
Viewd030e74

motifToGene sidesteps regexes by grep fixed=TRUE

paul-shannon authored on 03/10/2017 18:13:41
September 26, 2017
View3b614ce

motif/TF mapping sources now case insensitive

paul-shannon authored on 26/09/2017 20:09:39
September 18, 2017
View1f060cb

Fixed jaspar format spacing and updated DESCRIPTION

Matthew Richards authored on 18/09/2017 18:31:33
September 12, 2017
View094b985

now annotates to TFs properly for MotifDb and TFClass sources

paul-shannon authored on 12/09/2017 20:20:46
September 7, 2017
View49ebd9d

geneToMotif, motifToGene, associateTranscriptionFactors tested

paul-shannon authored on 07/09/2017 23:28:23
August 26, 2017
View5afdc5a

Added SR organism as Hsapiens

Matthew Richards authored on 26/08/2017 00:22:36