March 18, 2020
View2d7af58

hocomoco core|secondary names now used for matrices & rownames mcols

paul-shannon authored on 18/03/2020 20:22:29
Viewfe1bab0

non-core hocomocov11 motifs tagged 'full' now 'secondary'

paul-shannon authored on 18/03/2020 19:22:54
March 16, 2020
Viewf56272b

hocomoco v11 can be queried by core|full and reliability (A-D)

paul-shannon authored on 16/03/2020 23:36:31
March 10, 2020
View5b88116

provisional addition of hocomoco v1, with reliability scores, A-D

paul-shannon authored on 10/03/2020 00:06:57
October 24, 2018
View5da060a

improved docs for query method

paul-shannon authored on 24/10/2018 19:02:56
June 3, 2018
View48c3af4

motif/tf mapping now includes the 'both' option, tfclass and motifdb. motifStack plotting added

paul-shannon authored on 03/06/2018 18:31:01
May 23, 2018
View9535d30

motifToGene fix: now combined empty source table with populated table

paul-shannon authored on 23/05/2018 18:32:17
May 18, 2018
Viewfda2dea

associateTranscriptionFactors greatly simplified, builds upon motifToGene

paul-shannon authored on 18/05/2018 23:22:10
Viewaaf4e1a

motifToGene refactored, now suuports c('motifDb', tfClass') sources

paul-shannon authored on 18/05/2018 22:05:19
May 10, 2018
View3cb31fd

added query2(mdb, andTerms, orTerms=c(), notTerms=c())

paul-shannon authored on 10/05/2018 23:52:12
February 2, 2018
View68ba7eb

motifToGene and geneToMotif now guard against emtpy tables, ignore.cae option added

paul-shannon authored on 02/02/2018 00:04:51
January 23, 2018
Viewe2f7996

removed test_Imports.R, pkg passes CHECK

paul-shannon authored on 23/01/2018 18:14:17
View5f111ac

added unit test to clarify geneToMotif results

paul-shannon authored on 23/01/2018 16:54:36
October 8, 2017
Viewdae43ec

noted query problem, with embedded regex chars

paul-shannon authored on 08/10/2017 16:38:03
October 4, 2017
View07b8ea8

string comparisons now sorted

paul-shannon authored on 04/10/2017 22:35:57