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View094b985
now annotates to TFs properly for MotifDb and TFClass sourcespaul-shannon authored on 12/09/2017 20:20:46 |
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View49ebd9d
geneToMotif, motifToGene, associateTranscriptionFactors testedpaul-shannon authored on 07/09/2017 23:28:23 |
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View2def1ee
roughed in data, methods and tests for mapping tf genes <--> motifspaul-shannon authored on 13/08/2017 00:19:12 |
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View8ff7379
Updated unit tests to accomodate added motifsMatthew Richards authored on 01/08/2017 16:44:49 |
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Viewfa5fbc9
Fixed 2 of 6 failing unit testsMatthew Richards authored on 01/08/2017 00:26:44 |
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View8c9d39f
Added jaspar output format and unit testsMatthew Richards authored on 15/06/2017 22:50:54 |
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View2f30a7b
in test.geneIdsAndTypes, typeCounts are now checked against minima, rather than absolute counts, hopting to make these tests robust against future additions to the datap.shannon authored on 28/08/2015 20:43:22 |
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View9ad58ff
expanded to top=50 rtahern top=5 in call to motifMatch, to ensure the search target is returned. this accomodates the peculiar fact MotIV's match algorithm and results differs on linux and macosp.shannon authored on 28/08/2015 20:40:02 |
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View000f7c7
relaxed test.run_MotIV.motifMatch() success criteria so that the motif-to-match now needs only to be within the top 5 hits returned. it will not necessarily (by MotIV matching strategy) necessarily be the best match.p.shannon authored on 28/08/2015 15:41:11 |
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Viewa84b875
disabled references to MotIV: the .so for that (separate) package failed to install commented out call to tomtom: that is not routinely available corrected a number of tests for the newly added cisbp databasep.shannon authored on 28/08/2015 04:30:26 |
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View5a4345d
updated a few counts to accomodate jaspar2014p.shannon authored on 10/04/2014 17:21:34 |
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Viewdc17ee9
latest available flybase identifers no longer map FBgn029750 to abp.shannon authored on 04/02/2014 19:29:41 |
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View4d5f4f4
stamlab geneIdType is now NA. unit test adjusted. motivated by macos failure of 'test.geneIdsAndTypes'p.shannon authored on 03/02/2014 19:40:10 |
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Viewfe92bd5
replaced deprecated 'values' with 'mcols'p.shannon authored on 03/02/2014 18:57:29 |
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View4ff3698
now accomodates jolma2013p.shannon authored on 30/08/2013 15:36:54 |