Browse code

Added 4 missing motifs from jaspar2016/hocomocov10/homer

Matthew Richards authored on 13/06/2017 22:54:48
Showing9 changed files

1 1
Binary files a/inst/extdata/hocomoco10.RData and b/inst/extdata/hocomoco10.RData differ
2 2
Binary files a/inst/extdata/homer.RData and b/inst/extdata/homer.RData differ
3 3
Binary files a/inst/extdata/jaspar2016.RData and b/inst/extdata/jaspar2016.RData differ
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1098
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1099
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1100
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1101
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1102
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1104
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1105
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1107
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1110
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1111
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1112
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1113
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1114
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1115
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1116
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1117
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1118
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1119
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1120
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1121
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1122
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1123
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1124
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1125
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1126
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1127
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1128
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1129
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1130
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1131
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1132
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1133
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1135
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1136
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1137
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1138
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1140
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1141
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1142
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1143
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1144
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1145
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1146
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1147
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1148
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1149
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1150
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1151
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1152
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1153
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1155
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1156
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1158
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1161
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1162
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1163
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1164
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1165
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1166
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1167
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1168
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1169
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1170
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1171
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1172
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1173
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1175
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1176
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1177
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1178
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1179
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1180
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1181
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1182
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1183
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1184
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1185
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1186
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1187
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1188
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1189
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1190
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1191
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1192
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1193
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1194
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1195
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1196
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1197
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1198
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1199
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1200
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1201
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1202
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1203
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1204
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1205
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1206
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1207
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1208
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1211
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1213
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1214
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1215
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1217
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1218
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1219
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1220
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1221
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1223
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1224
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1225
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1226
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1227
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1228
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1230
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1231
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1232
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1233
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1234
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1235
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1236
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1238
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1240
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1251
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1288
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1293
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1303
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1304
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1305
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1306
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1312
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1313
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1314
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1315
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1316
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1319
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1345
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1357
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1616
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1617
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1618
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1619
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1620
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1621
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1623
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1625
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1626
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1627
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1628
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1629
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1630
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1631
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1633
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1635
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1636
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1637
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1638
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1639
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1640
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1641
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1642
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1643
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1644
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1645
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1646
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1648
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1649
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1650
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1651
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1653
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1654
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1655
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1656
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1657
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1658
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1659
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1660
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1663
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1665
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1666
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1667
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1668
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1669
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1670
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1671
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1672
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1673
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1674
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1675
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1678
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1679
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1684
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1685
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1688
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1689
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1690
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1691
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1693
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1704
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1706
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1707
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1709
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1710
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1711
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1712
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1713
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1714
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1718
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1719
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1720
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1722
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1723
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1724
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1725
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1726
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1728
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1729
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1731
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1735
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1738
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1739
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1743
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1755
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1757
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1759
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1760
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1761
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1763
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1764
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1765
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1784
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1789
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1811
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1814
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1815
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1816
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1818
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1820
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1821
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1827
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1828
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1830
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1833
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1834
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1840
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1842
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1843
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1848
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1853
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1856
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1859
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1860
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1863
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1865
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1870
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1874
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1885
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1886
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1888
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1890
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+9305	7553	3291	2122	377	23	85	587	451	24750	16966	11215	4810	2630	850	2211	1296	2312	4146
1894
+7381	7754	4232	1499	2590	71	190	16109	13977	14208	13290	3022	1637	672	849	673	3047	8390	9867
1895
+11322	11943	30735	41536	607	1519	44887	28240	273	5034	9629	25579	28575	29392	21364	14402	24592	26025	13437
1896
+>NKX62_HUMAN.H10MO.D
1897
+2467	2800	1508	149	7665	8059	78	890	5055	731	1564
1898
+1765	1228	364	188	4	1	0	240	248	3715	2729
1899
+1601	1429	448	101	239	0	13	2982	2470	2375	2070
1900
+2228	2604	5741	7623	153	1	7970	3949	288	1240	1698
1901
+>NOBOX_HUMAN.H10MO.C
1902
+19	0	64	64	2	2	24	13	5
1903
+22	0	0	2	2	0	0	20	18
1904
+3	0	0	0	2	7	42	29	11
1905
+22	66	2	0	60	57	0	4	32
1906
+>NOTO_HUMAN.H10MO.D
1907
+7315	1246	536	25288	25705	14	590	18234	4212	5366	3106
1908
+4655	7143	558	132	11	14	10	444	1326	5143	5129
1909
+10571	1872	357	176	70	54	4721	2935	19156	8219	4001
1910
+3304	15584	24394	249	59	25763	20524	4232	1151	7117	13609
1911
+>NR0B1_HUMAN.H10MO.D
1912
+0	3	1	1	0	0	2	7	2	5
1913
+2	6	0	0	0	2	0	1	3	0
1914
+6	0	8	3	9	7	6	1	4	4
1915
+1	0	0	5	0	0	1	0	0	0
1916
+>NR1D1_HUMAN.H10MO.C
1917
+7	7	11	11	4	0	11	0	0	0	0	13	5	6
1918
+1	0	1	0	2	1	0	0	0	0	12	0	1	0
1919
+2	1	0	0	6	1	2	12	13	0	0	0	5	3
1920
+3	5	1	2	1	11	0	1	0	13	1	0	2	4
1921
+>NR1H2_HUMAN.H10MO.D
1922
+1	13	13	15	0	0	0	0	19	19	19	0	0	0	0	19	15	0	0
1923
+1	4	0	0	0	0	0	19	0	0	0	0	0	0	19	0	0	12	1
1924
+1	0	4	4	19	18	0	0	0	0	0	19	19	0	0	0	2	5	12
1925
+16	2	2	0	0	1	19	0	0	0	0	0	0	19	0	0	2	2	6
1926
+>NR1H4_HUMAN.H10MO.C
1927
+22	21	0	1	1	1	44	17	2	10	27	3	1	4
1928
+2	1	1	0	3	37	0	9	6	1	6	38	40	5
1929
+17	23	43	39	1	6	1	9	7	33	4	1	1	5
1930
+4	0	1	5	40	1	0	10	30	1	8	3	3	31
1931
+>NR1I2_HUMAN.H10MO.C
1932
+9	9	12	8	2	0	0	20	17	9	9	17	27	0	0	3	0	26	4
1933
+4	2	4	0	6	1	17	9	3	6	7	2	0	0	2	2	22	1	7
1934
+6	11	12	19	16	2	2	0	5	8	7	10	2	29	9	1	4	2	10
1935
+10	7	1	2	5	26	10	0	4	6	6	0	0	0	18	23	3	0	8
1936
+>NR1I2_HUMAN.H10MO.S
1937
+21	34	0	5	0	0	44	5
1938
+3	0	0	0	1	42	0	15
1939
+15	11	45	9	0	3	1	11
1940
+6	0	0	31	44	0	0	14
1941
+>NR1I3_HUMAN.H10MO.C
1942
+9	13	5	0	0	0	26	9	7	11	16	25	1	0	5	0	20	5
1943
+0	2	0	4	0	23	2	5	5	6	2	0	0	2	3	20	2	4
1944
+14	13	21	20	1	2	0	10	11	7	9	3	27	6	0	2	4	10
1945
+5	0	2	4	27	3	0	4	5	4	1	0	0	20	20	6	2	9
1946
+>NR1I3_HUMAN.H10MO.S
1947
+17	24	0	0	0	0	33	2
1948
+1	0	0	0	0	30	0	10
1949
+11	9	33	13	0	2	0	11
1950
+4	0	0	20	33	1	0	10
1951
+>NR2C1_HUMAN.H10MO.C
1952
+4	1	2	5	12	4	17	0	0	0	0	17	2
1953
+2	6	10	8	0	3	0	0	0	0	18	0	5
1954
+11	8	1	4	6	10	1	18	14	0	0	0	6
1955
+1	3	5	1	0	1	0	0	4	18	0	1	5