MotifDb <- NULL #------------------------------------------------------------------------------- .MotifDb = function(loadAllSources=TRUE, quiet=TRUE) { mdb = MotifList() if(loadAllSources) { data.path = system.file('extdata', package='MotifDb') data.files = dir(data.path, full.names=TRUE) for(data.file in data.files) { # define these to keep 'check' happy. they are loaded by 'load' tbl.md = NA; matrices = NA; variables = load(data.file) mdb = append(mdb, MotifList(matrices, tbl.md)) if(!quiet) message(noquote(sprintf('added %s(%d) matrices, length now: %d', basename(data.file), length(matrices), length(mdb)))) } # for data.file if(!quiet) { print(table(values(mdb)$dataSource)) } } # if loadAllSources return(mdb) } # MotifDb #------------------------------------------------------------------------------- .onLoad <- function(libname, pkgname) { MotifDb <<- .MotifDb(loadAllSources=TRUE, quiet=TRUE) } #-------------------------------------------------------------------------------