| 1a90fb1e |
CHANGES IN VERSION 1.30
-----------------------
NEW FEATURES
o now has HOCOMOCO version 11, with all motifs classified, and queryable,
by category ("core", "secondary") and reliability (A, B, C, D).
|
| 5da060a6 |
CHANGES IN VERSION 1.24
-----------------------
NEW FEATURES
o query method now flexible, with "andStrings", "orStrings", "notStrings" parameters
The previous usage style is still supported. See man page.
o associateTranscriptionFactors (with motifs) substantially faster
|
| 31071c43 |
CHANGES IN VERSION 1.20
-----------------------
NEW FEATURES
o Now 13 sources, 52 organisms and 8369 motifs
o New sources: HOCOMOCOv10, HOMER, jaspar2016, SwissRegulon
o New methods: motifToGene, geneToMotif, associateTranscriptionFactors
SIGNIFICANT USER-VISIBLE CHANGES
o The new methods mentioned above provide both strict and permissive
mapping from motifs to their cognate transcription factors, thus
supporting reproducible regulatory network construction.
|
| 0d276ef8 |
CHANGES IN VERSION 1.5.9
-------------------------
NEW FEATURES
o JASPAR_2014 added, with 592 motifs
|
| d574c61f |
CHANGES IN VERSION 1.1.3
|
| 6666b3f4 |
-------------------------
NEW FEATURES
|
| 31071c43 |
o 683 new motifs derived from DGF (digital genome footprinting)
|
| d574c61f |
from the stamlab (http://www.stamlab.org/) added. Each is
identified as either 'knownMotif' or 'novelMotif'
|
