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Case1_URA.png 100644 254 kb
DEGs_volcano.png 100644 519 kb
FEAplot.png 100644 134 kb
GSEAplot.png 100644 147 kb
Moonlight.Rmd 100644 27 kb
Moonlight_Pipeline.png 100644 1,182 kb
URAplot.png 100644 125 kb
circos_ocg_tsg_ncancer5.png 100644 2,109 kb
circos_ocg_tsg_stages.png 100644 2,110 kb
networkHive.png 100644 331 kb
README.md
Cancer Structural Biology Group, Danish Cancer Society Research Center, Strandboulevarden 49, 2100, Copenhagen, Denmark Cancer Systems Biology, Section of Bioinformatics, Department of Health and Technology, Technical University of Denmark, 2800, Lyngby, Copenhagen Repository associated to the publication: Interpreting pathways to discover cancer driver genes with Moonlight. Colaprico A, Olsen C, Bailey MH, Odom GJ, Terkelsen T, Silva TC, Olsen AV, Cantini L, Zinovyev A, Barillot E, Noushmehr H, Bertoli G, Castiglioni I, Cava C, Bontempi G, Chen XS, Papaleo E. Nat Commun. 2020 Jan 3;11(1):69. doi: 10.1038/s41467-019-13803-0., PMID: 31900418 contacts for repository: Elena Papaleo, elpap-at-dtu.dk, elenap-at-cancer.dk; Matteo Tiberti: tiberti-at-cancer.dk # Identify oncogenes and tumor suppressor genes from genomic (gene expression) data. ### Installation from Bioconductor ### ```R if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("MoonlightR") ``` ### Installation from GitHub ### ```R devtools::install_github(repo = "ibsquare/MoonlightR") ```