1. Modstrings
  2. Graph
Graph of Modstrings
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  • 1749d80 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:11:38 -0400;
  • 27ebb4b (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 11:11:38 -0400;
  • 6673e49 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:08:24 -0400;
  • c11469e (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 11:08:24 -0400;
  • 7b67aa9 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:22 -0400;
  • 7d268fc (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:19:22 -0400;
  • 8b0f758 (origin/RELEASE_3_15, RELEASE_3_15) fixed bug in combineIntoModstrings by FelixErnst <felix.gm.ernst@outlook.com> 2022-08-13 21:09:03 +0200;
  • 4900985 fixed bug in combineIntoModstrings by FelixErnst <felix.gm.ernst@outlook.com> 2022-08-13 21:06:09 +0200;
  • 4bcd6f8 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:53:36 +0000;
  • 2b2a4ca bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:53:36 +0000;
  • 315ca2c Pass serialized S4 instances thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-17 06:12:10 -0800;
  • 36db755 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:49:56 +0000;
  • 88e7263 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:49:56 +0000;
  • ac006ca bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:41:35 +0000;
  • 8d52df1 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 16:41:35 +0000;
  • 9d989c5 added more output to man pages by FelixErnst <felix.gm.ernst@outlook.com> 2021-03-05 09:27:02 +0100;
  • c1967b4 Update README.md by Felix Ernst <felix.gm.ernst@outlook.com> 2021-01-10 20:29:22 +0100;
  • b8093fe removed travis build by FelixErnst <felix.gm.ernst@outlook.com> 2020-12-13 13:40:30 +0100;
  • 517d5f3 man page fix by FelixErnst <felix.gm.ernst@outlook.com> 2020-12-13 13:33:53 +0100;
  • 04199e3 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:43:31 -0400;
  • 7ee54eb (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 11:43:31 -0400;
  • 180ac2b (origin/RELEASE_3_11, RELEASE_3_11) Update DESCRIPTION by FelixErnst <felix.gm.ernst@outlook.com> 2020-08-01 13:48:31 +0200;
  • 172ad2d Update DESCRIPTION by FelixErnst <felix.gm.ernst@outlook.com> 2020-07-18 09:40:04 +0200;
  • 0b19e82 reworked code dependent on assertive package by FelixErnst <felix.gm.ernst@outlook.com> 2020-07-18 09:34:17 +0200;
  • fe01e04 changed to R 4.0 for GHA by FelixErnst <felix.gm.ernst@outlook.com> 2020-07-17 22:46:09 +0200;
  • 91c17af updated Rbuildignore by FelixErnst <felix.gm.ernst@outlook.com> 2020-07-17 22:29:52 +0200;
  • cbe7df9 Merge branch 'master' of git.bioconductor.org:packages/Modstrings by FelixErnst <felix.gm.ernst@outlook.com> 2020-07-17 22:25:11 +0200;
  • dc028e4 Update R-CMD-check.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-06-01 14:02:00 +0200;
  • 7c104da bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:24:15 +0000;
  • 016ad03 bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 19:24:15 +0000;
  • e38fe8c Merge branch 'master' of https://github.com/FelixErnst/Modstrings by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-27 07:50:05 +0200;
  • a7abc2a Update R-CMD-check.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-27 07:50:02 +0200;
  • 06ecd44 Update pkgdown.yaml by Felix Ernst <felix.gm.ernst@outlook.com> 2020-04-27 07:44:43 +0200;
  • 5eb765c Update R-CMD-check.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:50:38 +0200;
  • 6e74404 removed additional system dependencies from CI config by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:49:07 +0200;
  • 83e9743 added libcurl4-gnutls-dev to CI config by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:44:51 +0200;
  • 47bbe94 Update R-CMD-check.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:40:08 +0200;
  • 86d0972 Update pkgdown.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:19:33 +0200;
  • 2265dc0 Update pkgdown.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:10:38 +0200;
  • 2facd9c Update R-CMD-check.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:06:06 +0200;
  • 7c9f0a5 Update R-CMD-check.yaml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-26 21:02:30 +0200;
  • bb73026 Update .travis.yml by Felix Ernst <felix.gm.ernst@outlook.com> 2020-04-10 14:24:09 +0200;
  • 33cb003 Create codecov.yml by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-10 14:21:54 +0200;
  • 47ae856 added GitHub Action config by FelixErnst <felix.gm.ernst@outlook.com> 2020-04-10 14:19:13 +0200;
  • 1b32bd0 added support for "Biostrings.coloring" options from Biostrings package by FelixErnst <felix.gm.ernst@outlook.com> 2020-03-21 18:37:09 +0100;
  • 98ccf75 removed compact_ellipsis character from show() by Felix Ernst <felix.gm.ernst@outlook.com> 2020-03-09 11:52:02 +0100;
  • d74ba49 Update Modstrings-separate.R by FelixErnst <felix.gm.ernst@outlook.com> 2020-03-04 08:25:48 +0100;
  • 956f4ed fixed bug in removeIncompatibleModifications() by FelixErnst <felix.gm.ernst@outlook.com> 2020-03-03 21:06:52 +0100;
  • 545e1ca fix for removeIncompatibleModifications(GRanges,XStringSet) by FelixErnst <felix.gm.ernst@outlook.com> 2020-03-02 18:26:40 +0100;
  • bbb51b5 fixed separate() man page example by FelixErnst <felix.gm.ernst@outlook.com> 2020-03-02 17:36:14 +0100;
  • e535c29 updated separate man page() by FelixErnst <felix.gm.ernst@outlook.com> 2020-03-02 17:21:41 +0100;
  • be1ea12 added incompatibleModifications(), combineModifications() and separate() for GRanges by FelixErnst <felix.gm.ernst@outlook.com> 2020-03-02 17:04:27 +0100;
  • 5ac2d3c updated README.md by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-28 15:35:10 +0100;
  • 0e4b1d2 Update .travis.yml by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-28 14:17:47 +0100;
  • 48b5e84 Update .travis.yml by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-28 12:50:57 +0100;
  • 4536e5f added tests for removeIncompatibleModifications() by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-28 12:47:19 +0100;
  • 0ae3699 added pkgdown and gh-pages config by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-28 11:28:41 +0100;
  • 178c22a optimization for removeIncompatibleModifications() by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-25 17:17:24 +0100;
  • 576460b Revert "removeIncompatibleModifications() uses strand information" by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-23 23:24:03 +0100;
  • cc5b84f removeIncompatibleModifications() uses strand information by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-23 22:28:33 +0100;
  • 1d1bcb8 fixed regression in combineIntoModstrings() by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-14 17:15:28 +0100;
  • 078f8ce fixed regression by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-13 15:34:42 +0100;
  • cac7970 refactored modifyNucleotides()/removeIncompatibleModifications() for slightly more efficiency by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-13 15:13:12 +0100;
  • d62ec70 refactored checking/unlisting of 'at' argument for removeIncompatibleModifications() by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-13 14:10:19 +0100;
  • bc455c0 Update Modstrings-separate.R by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-11 22:09:23 +0100;
  • ecd3e44 refactored combine_modifications by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-11 20:34:04 +0100;
  • 8f5e6b8 refactored normalization of GRanges by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-11 15:15:29 +0100;
  • a77d534 added removeIncompatibleModifications() and refactored combineIntoModstrings()/modifyNucleotides() by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-11 14:03:56 +0100;
  • 38a1ede result sorting of separate takes names of input into account by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-06 00:39:47 +0100;
  • 6cf60eb combineIntoModstrings() is now 'vectorized' for multiple sequences by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-05 21:29:45 +0100;
  • 9c4ab65 Update README.md by Felix Ernst <felix.gm.ernst@outlook.com> 2020-02-01 15:33:46 +0100;
  • 43e07f1 (origin/RELEASE_3_10, RELEASE_3_10) updated vignette by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-01 15:22:58 +0100;
  • d56d7fa updated vignettes by FelixErnst <felix.gm.ernst@outlook.com> 2020-02-01 15:21:56 +0100;
  • c97ff2e fixed a small regression for length of logicals by Felix Ernst <felix.gm.ernst@outlook.com> 2020-01-23 14:33:49 +0100;
  • e5e14ba fixed multiple bugs by Felix Ernst <felix.gm.ernst@outlook.com> 2020-01-23 13:35:34 +0100;
  • bc36e59 refactored xscodes() and readModRNAStringSet() by Felix Ernst <felix.gm.ernst@outlook.com> 2020-01-23 01:29:30 +0100;
  • 633af63 Update .travis.yml by FelixErnst <felix.gm.ernst@outlook.com> 2020-01-21 00:00:57 +0100;
  • 5d1ab68 added travis config by FelixErnst <felix.gm.ernst@outlook.com> 2020-01-20 23:59:43 +0100;
  • 36bc54e bugfix for ModString show method by Felix Ernst <felix.gm.ernst@outlook.com> 2020-01-16 19:37:09 +0100;
  • 065b0c8 Update Modstrings.Rmd by FelixErnst <felix.gm.ernst@outlook.com> 2020-01-16 13:38:57 +0100;
  • 2237bfe updated vignette by Felix Ernst <felix.gm.ernst@outlook.com> 2020-01-09 11:24:49 +0100;
  • 3cf92ea Update Modstrings-ModStringSet.R by FelixErnst <felix.gm.ernst@outlook.com> 2020-01-09 11:10:40 +0100;
  • e33c3e7 Update Modstrings-external-functions.R by FelixErnst <felix.gm.ernst@outlook.com> 2020-01-09 11:08:56 +0100;
  • 5fb89ea updated documentation by Felix Ernst <felix.gm.ernst@outlook.com> 2020-01-09 10:56:36 +0100;
  • 8220afd updated DESCRIPTION and NEWS by Felix Ernst <felix.gm.ernst@outlook.com> 2019-12-02 01:47:10 +0100;
  • 5a1cbd3 Display ModDNA and ModRNA sequences in color (experimental) by Felix Ernst <felix.gm.ernst@outlook.com> 2019-12-02 00:48:25 +0100;
  • 7428fa7 small man page fix by FelixErnst <felix.gm.ernst@outlook.com> 2019-11-25 23:19:13 +0100;
  • 5fc74f5 Merge branch 'master' of git.bioconductor.org:packages/Modstrings by FelixErnst <felix.gm.ernst@outlook.com> 2019-11-25 23:18:34 +0100;
  • c6c43e9 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:43:31 -0400;
  • ad29251 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:11:31 -0400;
  • a37485c Update README.md by Felix Ernst <felix.gm.ernst@outlook.com> 2019-09-30 12:03:24 +0200;
  • 80ac4da Added explanation for read/saving fasta with special functions by Felix Ernst <felix.ernst@ulb.ac.be> 2019-09-25 08:37:14 +0200;
  • ba2cef0 Fixed typos in vignette by Felix Ernst <felix.ernst@ulb.ac.be> 2019-09-25 08:27:55 +0200;
  • 0322f64 (origin/RELEASE_3_9, RELEASE_3_9) update from master by Felix Ernst <felix.ernst@ulb.ac.be> 2019-06-25 19:15:50 +0200;
  • 068aec4 added reference to DNAmod publication by Felix Ernst <felix.ernst@ulb.ac.be> 2019-06-25 18:54:50 +0200;
  • 9ef871b Update DESCRIPTION by Felix Ernst <felix.ernst@ulb.ac.be> 2019-06-11 16:47:58 +0200;
  • 7c71645 Update DESCRIPTION by Felix Ernst <felix.ernst@ulb.ac.be> 2019-06-11 16:46:49 +0200;
  • 2228bca fixed DESCRIPTION by Felix Ernst <felix.ernst@ulb.ac.be> 2019-05-21 08:50:21 +0200;
  • fe9582d updated citation by Felix Ernst <felix.ernst@ulb.ac.be> 2019-05-21 08:48:17 +0200;
  • 49a83a2 Merge remote-tracking branch 'upstream/master' by Felix Ernst <felix.ernst@ulb.ac.be> 2019-05-21 08:44:34 +0200;