1. MinimumDistance
  2. Graph
Graph of MinimumDistance
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  • 91a8f97 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:50:03 -0400;
  • b1328d8 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:50:03 -0400;
  • d8bb696 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:22:56 -0400;
  • c329604 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:22:56 -0400;
  • d0215e7 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:56 -0400;
  • 9206e15 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:56 -0400;
  • 890c04a bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:10:56 +0000;
  • 15db0ee (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:10:56 +0000;
  • fc18f7b bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:03:02 +0000;
  • 48aab1f (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:03:02 +0000;
  • 4489284 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:52:19 +0000;
  • 9e0f7b9 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:52:19 +0000;
  • 27067e1 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:45:43 -0400;
  • 50ebfdd (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:45:43 -0400;
  • 4c32fd3 Replace colMads(object) with colMads(copyNumber(object)) by rscharpf <rscharpf@jhu.edu> 2020-10-10 08:36:10 -0400;
  • dcfbeb2 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:29:35 +0000;
  • a9633d0 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:29:35 +0000;
  • f1cf6b8 update documentation and remove snpchip dependency by rscharpf <rscharpf@jhu.edu> 2020-03-16 21:07:58 -0400;
  • 64074ca bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:09 -0400;
  • a0d8b42 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:31 -0400;
  • 147e647 Merge remote-tracking branch 'upstream/master' by rscharpf <rscharpf@jhu.edu> 2019-09-14 13:40:59 -0400;
  • 5cbbbe7 Pedigree2 now contains DFrame instead of DataFrame by Hervé Pagès <hpages@fredhutch.org> 2019-08-16 16:24:55 -0700;
  • c147e84 resync with VanillaICE 1.47.1 and SummarizedExperiment 1.15.4 by Hervé Pagès <hpages@fredhutch.org> 2019-06-17 19:00:15 -0700;
  • 7d7863c bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:11 -0400;
  • d2f2cd7 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:35 -0400;
  • bc54083 Removing '@name coerce' fixed the coercion documentation warning by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2019-04-20 20:34:37 -0400;
  • c78d9d4 Change signature of dims method from 'object' to 'x' by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2019-04-20 17:43:19 -0400;
  • a418586 Removed 'usage as(from, to)' for coerce method by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2019-04-20 17:42:56 -0400;
  • 8310ba6 Merge remote-tracking branch 'upstream/master' by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2019-04-14 21:05:21 -0400;
  • 08c599c update by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2019-04-14 21:04:11 -0400;
  • d92053a bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:30 -0400;
  • a1f0e23 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:49 -0400;
  • 3f90065 bump version by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-10-25 06:27:34 -0400;
  • 33851f2 update documentation by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-10-25 06:27:17 -0400;
  • dffe0e8 update unittests makefile by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 10:27:50 -0400;
  • 9bb9626 Delete TrioSet example by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 10:26:45 -0400;
  • d2bb4ce generic for dims uses 'x' and not 'object' by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 10:07:33 -0400;
  • 1405594 update test_MAP2 by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 09:45:09 -0400;
  • 583f2a9 Update makefile for unit tests by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 09:42:14 -0400;
  • 0c00b62 Remove commented code in test_quads.R by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 09:42:02 -0400;
  • 781a5a8 Delete example in deprecated TrioSet by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 08:15:32 -0400;
  • 6eaaf5a updated man files by Robert Scharpf <rscharpf@Roberts-MacBook-Pro-2.local> 2018-07-07 07:58:25 -0400;
  • 10d4bbf (origin/RELEASE_3_7, RELEASE_3_7) Bump version number by rscharpf <rscharpf@MacBook-Pro.local> 2018-05-01 09:07:45 -0400;
  • eb074d7 Use fread(..., skip = "[Data]") in vignette by rscharpf <rscharpf@MacBook-Pro.local> 2018-05-01 08:56:25 -0400;
  • de9b96e Use fread(..., skip = "[Data]") in vignette by rscharpf <rscharpf@MacBook-Pro.local> 2018-05-01 08:56:25 -0400;
  • 2c13d39 Merge remote-tracking branch 'upstream/master' by rscharpf <rscharpf@MacBook-Pro.local> 2018-05-01 08:53:50 -0400;
  • dae2464 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:38 -0400;
  • 7229981 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:24 -0400;
  • cbdba05 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:18 -0400;
  • cb99616 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:40 -0400;
  • 9edbe38 Bump version of packages that define RangedSummarizedExperiment derivatives (direct or indirect). Will help get rid of those class definitions that are cached on the user machines and became stale after GenomicRangesORGRangesList was renamed GenomicRanges_OR_GRangesList (on June 18, commit 130486). by Herve Pages <hpages@fhcrc.org> 2017-06-27 17:05:27 +0000;
  • 00b0567 use pruning.mode="coarse" instead of force=TRUE when calling seqlevels() setter by Herve Pages <hpages@fhcrc.org> 2017-04-29 21:15:19 +0000;
  • 06cc496 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • f509c44 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • e0283b8 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • 694ad3c bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 0f55fa6 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 21be523 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • f1686cc Remove reduce from exports by Rob Scharp <rscharpf@jhsph.edu> 2016-09-27 16:46:47 +0000;
  • dbaec3a Fix subset method for TrioSet by Rob Scharp <rscharpf@jhsph.edu> 2016-09-27 16:46:41 +0000;
  • 556eef8 Load data within function environment by Rob Scharp <rscharpf@jhsph.edu> 2016-09-27 16:46:35 +0000;
  • 66ca35e Change F to F. to prevent BiocCheck warnings by Rob Scharp <rscharpf@jhsph.edu> 2016-09-27 16:46:29 +0000;
  • e5f9b66 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;
  • cc167c8 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:26:31 +0000;
  • 31c0074 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:20:18 +0000;
  • 914ec68 SPEEDUP: Using rowMads() of matrixStats. (approved by Rob Scharpf) by H Bengtsson <hb@aroma-project.org> 2016-03-05 22:12:46 +0000;
  • 0b08f89 Add missing period to package description by H Bengtsson <hb@aroma-project.org> 2016-03-05 21:55:45 +0000;
  • 1fccf9d ROBUSTNESS: Explicitly importing stats and utils functions by H Bengtsson <hb@aroma-project.org> 2016-03-05 21:51:18 +0000;
  • 88918cc Rebuilt Rd and NAMESPACE (using roxygen2 5.0.1) by H Bengtsson <hb@aroma-project.org> 2016-03-05 21:20:48 +0000;
  • 4190eba Fixing minor issues in DESCRIPTION by H Bengtsson <hb@aroma-project.org> 2016-03-05 21:04:38 +0000;
  • 605706b elementLengths was renamed -> elementNROWS in S4Vectors (new name reflects TRUE semantic, old name will be deprecated soon) by Herve Pages <hpages@fhcrc.org> 2016-01-29 01:22:03 +0000;
  • e4a49c7 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:59:53 +0000;
  • 484be97 (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:57:33 +0000;
  • f4362b9 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-10-13 19:36:05 +0000;
  • c5e999c Commit made by the Bioconductor Git-SVN bridge. by Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org> 2015-06-20 13:20:52 -0700;
  • 415c37c Fix MinDistExperiment() constructor function by making it agnostic of the internals of ancestor class RangedSummarizedExperiment. This should prevent it from breaking again next time RangedSummarizedExperiment internals change (not that we plan to change them again anytime soon though). by Herve Pages <hpages@fhcrc.org> 2015-06-20 20:09:39 +0000;
  • 05adb3a Commit made by the Bioconductor Git-SVN bridge. by Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org> 2015-06-18 16:46:28 -0700;
  • 7619967 Re-serialize (again) RangedSummarizedExperiment object included in the package in response to latest changes in RangedSummarizedExperiment internals. by Herve Pages <hpages@fhcrc.org> 2015-06-18 23:35:21 +0000;
  • b64b0dc Commit made by the Bioconductor Git-SVN bridge. by Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org> 2015-05-12 21:58:23 -0700;
  • 8e9979d Some tweaks in response to the SummarizedExperiment class defined in the GenomicRanges package being replaced with the RangedSummarizedExperiment class defined in the new SummarizedExperiment package: - Import the new SummarizedExperiment package. - Replace all occurences of SummarizedExperiment, rowData, and exptData, with RangedSummarizedExperiment, rowRanges, and metadata, respectively. - Update serialized MinDistExperiment object (data/md_exp.rda) included in the package. - Bump version. by Herve Pages <hpages@fhcrc.org> 2015-05-13 04:48:36 +0000;
  • 611a9cb Commit made by the Bioconductor Git-SVN bridge. by Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org> 2015-05-04 13:14:49 -0700;
  • 780094e use rowRanges instead of defunct rowData by Herve Pages <hpages@fhcrc.org> 2015-05-04 20:05:25 +0000;
  • 50c9cd5 Commit made by the Bioconductor Git-SVN bridge. by Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org> 2015-04-16 21:35:29 -0700;
  • c0685e4 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:02:44 +0000;
  • f61d8dc (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 20:00:01 +0000;
  • 4e13909 Commit made by the Bioconductor Git-SVN bridge. by Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org> 2015-04-16 12:53:29 -0700;
  • 9ab65ab Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <dtenenba@fhcrc.org> 2015-04-16 19:42:01 +0000;
  • baadda3 Commit made by the Bioconductor Git-SVN bridge. by Rob Scharp <rscharpf@jhsph.edu> 2015-04-01 19:45:52 +0000;
  • 0238d3c changed API of lrrFile, bafFile, and gtFile for compatibility with VanillaICE by Robert Scharpf <rscharpf@Roberts-MacBook-Pro.local> 2015-04-01 15:45:29 -0400;
  • 4e426e6 Commit made by the Bioconductor Git-SVN bridge. by Bioconductor Git-SVN Bridge <bioc-sync@bioconductor.org> 2015-03-03 14:42:58 -0800;
  • 95defbc follow replacement of 'rowData' with 'rowRanges' by Valerie Obenchain <vobencha@fhcrc.org> 2015-03-03 22:35:52 +0000;
  • c34f431 (origin/RELEASE_3_0, RELEASE_3_0) Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Rob Scharp <rscharpf@jhsph.edu> 2015-02-11 02:08:54 +0000;
  • 6ae898f Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Rob Scharp <rscharpf@jhsph.edu> 2015-02-11 02:07:12 +0000;
  • 5010cd2 update for new matrixStats API by Robert Scharpf <rscharpf@Roberts-MacBook-Pro.local> 2015-02-10 21:05:16 -0500;
  • 883d3b0 Commit made by the Bioconductor Git-SVN bridge. Consists of 2 commits. by Rob Scharp <rscharpf@jhsph.edu> 2014-10-22 02:11:51 +0000;
  • 94f7ff0 version bump by Rob Scharpf <rscharpf@jhu.edu> 2014-10-21 22:11:27 -0400;
  • fbda20e remove unneeded line in MinDistExperiment constructor by Rob Scharpf <rscharpf@jhu.edu> 2014-10-21 22:10:27 -0400;
  • 8e46ec7 Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by Rob Scharp <rscharpf@jhsph.edu> 2014-10-21 01:52:43 +0000;
  • 40a354d Commit made by the Bioconductor Git-SVN bridge. Consists of 2 commits. by Rob Scharp <rscharpf@jhsph.edu> 2014-10-20 17:50:05 +0000;
  • 01729d1 several changes to sync MinimumDistance with VanillaICE 1.29.3 by Rob Scharpf <rscharpf@jhu.edu> 2014-10-20 10:53:36 -0400;