git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MineICA@73179 bc3139a8-67e5-0310-9ffc-ced21a209358
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+\name{nbOccByGeneInComp} |
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+\alias{nbOccByGeneInComp} |
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+\title{nbOccByGeneInComp} |
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+\description{For each feature/gene, this function returns the indices of the components they contribute to. } |
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+\usage{nbOccByGeneInComp(Slist, cutoff, sel)} |
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+\arguments{ |
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+ \item{Slist}{A list whose each element contains projection values of |
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+ features/genes on a component.} |
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+ \item{cutoff}{A threshold to be used to define a gene as contributor} |
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+ \item{sel}{A list whose each element contains projection values of |
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+ contributing features/genes on a component (the difference with arg |
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+ \code{Slist} is that \code{sel} is already restricted to the contributing genes).} |
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+} |
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+ |
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+\value{This function returns a list which gives for each feature/gene the indices of the components it contributes to.} |
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+ |
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+\examples{ |
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+ c1 <- rnorm(100); names(c1) <- paste("g",100:199,sep="") |
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+ c2 <- rnorm(100); names(c2) <- paste("g",1:99,sep="") |
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+ MineICA:::nbOccByGeneInComp(Slist=list(c1,c2), cutoff= 0.5) |
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+ |
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+ } |
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+\author{Anne Biton} |
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+ |
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+ |
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+ |
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+ |
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+ |