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Adds MineICA, SomatiCA and lpNet to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MineICA@73179 bc3139a8-67e5-0310-9ffc-ced21a209358

Marc Carlson authored on 05/02/2013 22:15:53
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+\docType{data}
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+\name{icaSetCarbayo}
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+\alias{icaSetCarbayo}
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+\title{IcaSet-object containing a FastICA decomposition of gene expression microarrray-based data of bladder cancer samples.}
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+\description{
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+  Object of class \code{\link{IcaSet}} containing an ICA
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+  decomposition calculated by the FastICA algorithm
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+  (through matlab function "icasso") on bladder cancer
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+  expression data measured on HG-U133A Affymetrix
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+  microarrays. The original expression data were normalized
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+  with MAS5 by the authors of the paper followed by
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+  log2-transformation. ICA was run on the dataset
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+  restricted to the 10000 most variable probe sets (based
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+  on IQR values). 10 components were computed. Only probe
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+  sets/genes having an absolute projection higher than 3
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+  are stored in this object.
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+}
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+\author{
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+  Anne Biton
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+}
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+\references{
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+  \url{http://jco.ascopubs.org/content/24/5/778/suppl/DC1}
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+}
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+\keyword{datasets}
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+