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Adds MineICA, SomatiCA and lpNet to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MineICA@73179 bc3139a8-67e5-0310-9ffc-ced21a209358

Marc Carlson authored on 05/02/2013 22:15:53
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+setClass(Class = "IcaSet",
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+         contains  = "eSet",
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+         representation = representation(
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+           A="data.frame",
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+           S="data.frame", 
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+           SByGene="data.frame", 
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+           compNames="character", 
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+           indComp="numeric",
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+           witGenes="character", 
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+           datByGene="data.frame",
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+           chipManu="character",
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+           chipVersion="character",
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+           refSamples="character",
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+           typeID="character", 
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+           organism = "character",
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+           mart="Mart"
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+         ),
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+         prototype   = prototype(new("VersionedBiobase", versions = c(classVersion("eSet"), IcaSet="0.1.0")))
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+         )
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+
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+
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+setClass(Class = "MineICAParams",
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+         representation = representation(
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+           Sfile="character",
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+           Afile="character",
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+           datfile="character",
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+           annotfile="character",
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+           resPath="character",
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+           genesPath="character",
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+           annot2col="character",
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+           pvalCutoff="numeric",
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+           selCutoff="numeric"
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+         )
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+         )
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+
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+