Browse code

Adds MineICA, SomatiCA and lpNet to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MineICA@73179 bc3139a8-67e5-0310-9ffc-ced21a209358

Marc Carlson authored on 05/02/2013 22:15:53
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+\name{writeRnkFiles}
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+\alias{writeRnkFiles}
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+\title{Write rnk files containing gene projections}
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+\usage{
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+  writeRnkFiles(icaSet, abs = TRUE, path)
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+}
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+\arguments{
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+  \item{icaSet}{An object of class \code{IcaSet}}
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+
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+  \item{abs}{If TRUE (default) the absolute projection
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+  values are used.}
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+
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+  \item{path}{The path that will contain the rnk files.}
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+}
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+\value{
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+  NULL
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+}
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+\description{
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+  Writes the gene projection values of each component in a
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+  '.rnk' file for GSEA.
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+}
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+\details{
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+  The .rnk format requires two columns, the first
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+  containing the gene IDs, the second containing the
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+  projection values. The genes are ordered by projection
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+  values. The files are named "index-of-component_abs.rnk"
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+  if \code{abs=TRUE}, or "index-of-component.rnk" if
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+  \code{abs=FALSE}.
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+}
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+\author{
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+  Anne
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+}
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+