git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MineICA@73179 bc3139a8-67e5-0310-9ffc-ced21a209358
1 | 1 |
new file mode 100644 |
... | ... |
@@ -0,0 +1,41 @@ |
1 |
+\name{dat} |
|
2 |
+\alias{dat} |
|
3 |
+\alias{dat,IcaSet-method} |
|
4 |
+\alias{dat<-} |
|
5 |
+\alias{dat<-,IcaSet-method} |
|
6 |
+\alias{dat<-,IcaSet,matrix-method} |
|
7 |
+\alias{datByGene} |
|
8 |
+\alias{datByGene,IcaSet-method} |
|
9 |
+\alias{datByGene<-} |
|
10 |
+\alias{datByGene<-,IcaSet-method} |
|
11 |
+\alias{datByGene<-,IcaSet,matrix-method} |
|
12 |
+ |
|
13 |
+\alias{geneNames} |
|
14 |
+\alias{geneNames,IcaSet-method} |
|
15 |
+ |
|
16 |
+ |
|
17 |
+\title{Retrieve and set data from IcaSet} |
|
18 |
+\description{ |
|
19 |
+ These generic functions access and set the attributes dat stored in an object of class \code{IcaSet}. |
|
20 |
+} |
|
21 |
+\usage{ |
|
22 |
+dat(object) |
|
23 |
+dat(object) <- value |
|
24 |
+datByGene(object) |
|
25 |
+datByGene(object) <- value |
|
26 |
+geneNames(object) |
|
27 |
+} |
|
28 |
+\arguments{ |
|
29 |
+ \item{object}{object of class \code{IcaSet}} |
|
30 |
+ \item{value}{Matrix with rows representing features or genes and columns samples.} |
|
31 |
+} |
|
32 |
+ |
|
33 |
+\value{ |
|
34 |
+ \code{dat} and \code{datByGene} return a matrix containing measured values (e.g |
|
35 |
+ expression data) indexed by features and genes, respectively. |
|
36 |
+ \code{geneNames} returns the names of the genes, i.e the row names of |
|
37 |
+ \code{datByGene}. |
|
38 |
+} |
|
39 |
+\author{Anne} |
|
40 |
+ |
|
41 |
+ |