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Adds MineICA, SomatiCA and lpNet to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MineICA@73179 bc3139a8-67e5-0310-9ffc-ced21a209358

Marc Carlson authored on 05/02/2013 22:15:53
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+\name{annot2Color}
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+\alias{annot2Color}
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+\title{Association of a colour with each annotation level}
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+\usage{
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+  annot2Color(annot)
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+}
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+\arguments{
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+  \item{annot}{a data.frame containing the sample
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+  annotations (of dimension 'samples x annotations').}
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+}
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+\value{
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+  A vector of colours indexed by the annotation levels.
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+}
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+\description{
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+  Given a data.frame consisting of sample annotations, this
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+  function returns a vector which gives a colour per
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+  annotation level.
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+}
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+\details{
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+  Arbitrary colours are attributed to some specific
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+  annotations met by the author, and for the remaining
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+  annotation levels, the colours are attributed using
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+  packages \code{RColorBrewer} and \code{rcolorspace}.
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+}
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+\author{
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+  Anne Biton
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+}
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+