git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MineICA@87035 bc3139a8-67e5-0310-9ffc-ced21a209358
Sonali Arora authored on 04/03/2014 22:12:21
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Package: MineICA |
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Type: Package |
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Title: Analysis of an ICA decomposition obtained on genomics data |
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-Version: 1.3.2 |
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+Version: 1.3.3 |
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Date: 2012-03-16 |
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Author: Anne Biton |
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Maintainer: Anne Biton <anne.biton@gmail.com> |
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-Description: The goal of MineICA is to perform Independent Component Analysis |
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- (ICA) on multiple transcriptome datasets, integrating additional data (e.g |
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- molecular, clinical and pathological). This Integrative ICA helps the |
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- biological interpretation of the components by studying their association |
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- with variables (e.g sample annotations) and gene sets, and enables the |
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- comparison of components from different datasets using correlation-based |
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- graph. |
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+Description: The goal of MineICA is to perform Independent Component |
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+ Analysis (ICA) on multiple transcriptome datasets, integrating |
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+ additional data (e.g molecular, clinical and pathological). |
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+ This Integrative ICA helps the biological interpretation of the |
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+ components by studying their association with variables (e.g |
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+ sample annotations) and gene sets, and enables the comparison |
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+ of components from different datasets using correlation-based |
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+ graph. |
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License: GPL-2 |
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LazyLoad: yes |
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-BiocViews: Bioinformatics, Visualizations, MultipleComparisons |
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-Imports: |
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- AnnotationDbi, |
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- lumi, |
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- fpc, |
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- lumiHumanAll.db |
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-Depends: |
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- R (>= 2.10), |
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- Biobase, |
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- plyr, |
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- ggplot2, |
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- scales, |
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- foreach, |
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- xtable, |
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- biomaRt, |
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- gtools, |
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- GOstats, |
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- cluster, |
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- marray, |
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- mclust, |
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- RColorBrewer, |
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- colorspace, |
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- igraph, |
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- Rgraphviz, |
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- graph, |
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- annotate, |
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- Hmisc, |
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- fastICA, |
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- JADE, |
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- methods |
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-Suggests: |
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- biomaRt, |
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- GOstats, |
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- cluster, |
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- hgu133a.db, |
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- mclust, |
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- igraph, |
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- breastCancerMAINZ, |
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- breastCancerTRANSBIG, |
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- breastCancerUPP, |
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- breastCancerVDX |
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+Imports: AnnotationDbi, lumi, fpc, lumiHumanAll.db |
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+Depends: R (>= 2.10), Biobase, plyr, ggplot2, scales, foreach, xtable, |
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+ biomaRt, gtools, GOstats, cluster, marray, mclust, |
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+ RColorBrewer, colorspace, igraph, Rgraphviz, graph, annotate, |
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+ Hmisc, fastICA, JADE, methods |
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+Suggests: biomaRt, GOstats, cluster, hgu133a.db, mclust, igraph, |
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+ breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP, |
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+ breastCancerVDX |
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Enhances: doMC |
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-Collate: |
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- 'AllClasses.R' |
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- 'AllGeneric.R' |
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- 'methods-IcaSet.R' |
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- 'methods-MineICAParams.R' |
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- 'compareAnalysis.R' |
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- 'functions_comp2annot.R' |
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- 'functions_comp2annottests.R' |
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- 'functions_enrich.R' |
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- 'functions.R' |
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- 'heatmap.plus.R' |
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- 'heatmapsOnSel.R' |
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- 'runAn.R' |
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- 'compareGenes.R' |
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+Collate: 'AllClasses.R' 'AllGeneric.R' 'methods-IcaSet.R' |
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+ 'methods-MineICAParams.R' 'compareAnalysis.R' |
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+ 'functions_comp2annot.R' 'functions_comp2annottests.R' |
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+ 'functions_enrich.R' 'functions.R' 'heatmap.plus.R' |
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+ 'heatmapsOnSel.R' 'runAn.R' 'compareGenes.R' |
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+biocViews: Visualizations, MultipleComparison |