| 14753e6b | Package: MineICA Type: Package Title: Analysis of an ICA decomposition obtained on genomics data |
| 5b32c0be | Version: 1.18.0 |
| 5559282e | Date: 2012-03-16 |
| 14753e6b | Author: Anne Biton |
| 40aecbc3 | Maintainer: Anne Biton <anne.biton@gmail.com> |
| 45bf2e0b | Description: The goal of MineICA is to perform Independent Component
Analysis (ICA) on multiple transcriptome datasets, integrating
additional data (e.g molecular, clinical and pathological).
This Integrative ICA helps the biological interpretation of the
components by studying their association with variables (e.g
sample annotations) and gene sets, and enables the comparison
of components from different datasets using correlation-based
graph.
|
| 14753e6b | License: GPL-2 LazyLoad: yes |
| 6d16c1d5 | Depends: R (>= 2.10), methods, BiocGenerics (>= 0.13.8), Biobase, plyr,
ggplot2, scales, foreach, xtable, biomaRt, gtools, GOstats, cluster,
marray, mclust, RColorBrewer, colorspace, igraph, Rgraphviz, graph,
annotate, Hmisc, fastICA, JADE
|
| 45bf2e0b | Imports: AnnotationDbi, lumi, fpc, lumiHumanAll.db
Suggests: biomaRt, GOstats, cluster, hgu133a.db, mclust, igraph,
breastCancerMAINZ, breastCancerTRANSBIG, breastCancerUPP,
breastCancerVDX
|
| 14753e6b | Enhances: doMC |
| 45bf2e0b | Collate: 'AllClasses.R' 'AllGeneric.R' 'methods-IcaSet.R'
'methods-MineICAParams.R' 'compareAnalysis.R'
'functions_comp2annot.R' 'functions_comp2annottests.R'
'functions_enrich.R' 'functions.R' 'heatmap.plus.R'
'heatmapsOnSel.R' 'runAn.R' 'compareGenes.R'
|
| 52e3a3f8 | biocViews: Visualization, MultipleComparison |