# Introduction `MicrobiomeProfiler` is an R-shiny package based on `clusterProfiler`, is user-friendly tool for functional enrichment analysis in microbiome data (T Wu, et al., 2021). # Installation Installation via BiocManager: if (!require("BiocManager")) install.packages("BiocManager") BiocManager::install("MicrobiomeProfiler") Or install `MicrobiomeProfiler` from github using devtools : ## Note that having installed clusterProfiler,config,DT,enrichplot,golem,magrittr,shiny,shinyWidgets,shinycustomloader,htmltools,ggplot2 if (!requireNamespace("devtools", quietly=TRUE)) install.packages("devtools") devtools::install_github("YuLab-SMU/MicrobiomeProfiler") # Quick Guides library(MicrobiomeProfiler) run_MicrobiomeProfiler() # Reference + T Wu^#, E Hu^#, S Xu, M Chen, P Guo, Z Dai, T Feng, L Zhou, W Tang, L Zhan, X Fu, S Liu, X Bo^\*, **G Yu**^\*. clusterProfiler 4.0: A universal enrichment tool for interpreting omics data. ***The Innovation***. 2021, 2(3):100141. doi: [10.1016/j.xinn.2021.100141](https://doi.org/10.1016/j.xinn.2021.100141)