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README.md
# MetaboAnnotation [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active) [![R-CMD-check-bioc](https://github.com/RforMassSpectrometry/MetaboAnnotation/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/RforMassSpectrometry/MetaboAnnotation/actions?query=workflow%3AR-CMD-check-bioc) [![codecov](https://codecov.io/gh/rformassspectrometry/MetaboAnnotation/branch/main/graph/badge.svg?token=RLMRUJGOQD)](https://codecov.io/gh/rformassspectrometry/MetaboAnnotation) [![license](https://img.shields.io/badge/license-Artistic--2.0-brightgreen.svg)](https://opensource.org/licenses/Artistic-2.0) [![years in bioc](http://bioconductor.org/shields/years-in-bioc/MetaboAnnotation.svg)](https://bioconductor.org/packages/release/bioc/html/MetaboAnnotation.html) [![Ranking by downloads](http://bioconductor.org/shields/downloads/release/MetaboAnnotation.svg)](https://bioconductor.org/packages/stats/bioc/MetaboAnnotation/) [![build release](http://bioconductor.org/shields/build/release/bioc/MetaboAnnotation.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/MetaboAnnotation/) [![build devel](http://bioconductor.org/shields/build/devel/bioc/MetaboAnnotation.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/MetaboAnnotation/) High level functions to assist in annotation of (metabolomics) data sets. These include functions to perform simple tentative annotations based on mass matching but also functions to consider m/z and retention times for annotation of LC-MS features given that respective reference values are available. In addition, the function provides high-level functions to simplify matching of LC-MS/MS spectra against spectral libraries and objects and functionality to represent and manage such matched data. For more information see the package [homepage](https://rformassspectrometry.github.io/MetaboAnnotation). # Installation The package can be installed with ```r install.packages("BiocManager") BiocManager::install("MetaboAnnotation") ``` # Contributions Contributions are highly welcome and should follow the [contribution guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions). Also, please check the coding style guidelines in the [RforMassSpectrometry vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).