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README.md
# MSstatsBioNet [![Codecov test coverage](https://codecov.io/github/Vitek-Lab/MSstatsBioNet/graph/badge.svg?token=SCPSPMTOEF)](https://codecov.io/github/Vitek-Lab/MSstatsBioNet) This package provides a suite of functions to query various network databases, filter queries & results, and visualize networks. ## Installation Instructions To install this package on bioconductor, run the following command: ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("MSstatsBioNet") ``` You can install the development version of this package through Github: ``` devtools::install_github("Vitek-Lab/MSstatsConvert", build_vignettes = TRUE) ``` ## License This package is distributed under the [Artistic-2.0](https://opensource.org/licenses/Artistic-2.0) license. However, its dependencies may have different licenses. Notably, INDRA is distributed under the [BSD 2-Clause](https://opensource.org/license/bsd-2-clause) license. Furthermore, INDRA's knowledge sources may have different licenses for commercial applications. Please refer to the [INDRA README](https://github.com/sorgerlab/indra?tab=readme-ov-file#indra-modules) for more information on its knowledge sources and their associated licenses. ## Databases Supported - INDRA ## Filtering Options Supported - P-Value Filter ## Visualization Options Supported - Cytoscape Desktop