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# MSA2dist <a href=""><img src="man/figures/logo.png" align="right" height="160" /></a> `MSA2dist` calculates pairwise distances between all sequences of a `DNAStringSet` or a `AAStringSet` using a custom score matrix and conducts codon based analysis. ## Installation instructions Get the latest stable `R` release from [CRAN]( Then install `MSA2dist` from [Bioconductor]( using the following code: ``` r if (!requireNamespace("BiocManager", quietly = TRUE)) { install.packages("BiocManager") } BiocManager::install("MSA2dist") ``` And the development version from [GitHub]( with: ``` r BiocManager::install("kullrich/MSA2dist") ``` ## Code of Conduct - Participation guidelines This repository adhere to [Contributor Covenant]( code of conduct for in any interactions you have within this project. (see [Code of Conduct]( See also the policy against sexualized discrimination, harassment and violence for the Max Planck Society [Code-of-Conduct]( By contributing to this project, you agree to abide by its terms.