# MANOR 1.59.5
* Merge inst/NEWS to NEWS.md
# MANOR 1.59.4
* Update broken links in vignette.
* Update broken links in vignette.
* Add BugReports link.
* Add missing dependencies 'rmarkdown' and 'bookdown' to Suggests.
# MANOR 1.59.3
* Package undeprecated by the Bioconductor maintainers.
# MANOR 1.59.2
* Turned old .Rnw vignette to .Rmd vignette.
* GLAD no more listed in Depends (only in Imports).
* Moved to UTF-8 encoding (to cope with French accents).
* Updated maintainer email address.
* Fixed "register native routines and to disable symbol search".
* Use R's RNG instead of the one from the system in C code.
# MANOR 1.37.2 (2014-10-01)
* Removed unused C functions for I/O in 'lib_io'.
# MANOR 1.37.1 (2014-10-01)
* Minor changes to C code to avoid WARNINGS upon R CMD check.
* Changed 'par' settings in vignette to avoid 'Figure margins too large' errors.
# MANOR 1.33.1 (2013-07-03)
* Replaced calls to 'exit', 'fprintf' which now raise a WARNING upon check.
* Iteration index not printed anymore in 'nem' (raised an error when compiling the vignette).
# MANOR 1.23.3 (2011-03-18)
* Updated calls to 'GLAD:::daglad' in the vignette to fix an error
caused by changes in the defaults of 'daglad'.
# MANOR 1.21.1 (2010-10-01)
* Cleaned 'data/flags.RData" which contained objects from an old 'globalenv'.
* Updated maintainer's email address.
# MANOR 1.19.1 (2010-01-24)
* Added (back) 'intensity.flag' to 'data/flags.RData' (had been removed since v 1.12.0 for an unknown reason).
# MANOR 1.15.4 (2009-01-15)
* misplaced alignment tab in man/spatial.Rd.
# MANOR 1.15.3 (2009-01-13)
* updated references in .Rd files.
* fixed warnings due to incorrect use of \item in .Rd files.
# MANOR 1.15.2 (2009-01-06)
* 'norm' and 'sort' are now S3 methods as well
# MANOR 1.15.1 (2009-01-04)
* (almost) one file per function in R/
* removed empty section \details in man/qscore.Rd
* added a NAMESPACE
* removed inst/doc/Makefile (not needed anymore because no html output required)
# MANOR 1.15.1 (2009-01-02)
* removed another non-standard keyword
# MANOR 1.15.1 (2009-01-01)
* only one keyword per \keyword entry...
# MANOR 1.15.0 (2008-12-31)
* now use standard "keyword"s
* changed \link{\code{stuff}} into \code{\link{stuff}}
# MANOR 1.15.0 (2008-11-26)
* filled in "keyword" sections in .Rd files.
* removed empty "examples" sections from .Rd files.
* initialized a few variables upon declaration in C code to prevent warnings in R CMD CHECK.
# MANOR 1.13.2 (2008-09-23)
* modification de la fonction cv pour retourner NA lorsque toutes la valeurs du vecteur sont à NA
* modification de la function getChromosomeArm pour que cytoband ne soit pas positionnée à NULL
# MANOR 1.13.1 (2008-09-04)
* added a CHANGELOG
* updated outdated reference in the .bib file
* changed the definition of flag "rep.flag" to avoid the error now caused by sd(NA, na.rm=TRUE)
