# Generated by roxygen2: do not edit by hand

export(alignSeq)
export(bhattacharyyaCoefficient)
export(bhattacharyyaMatrix)
export(chordDiagramVDJ)
export(clonalRelatedness)
export(clonality)
export(cloneTrack)
export(commonSeqs)
export(commonSeqsBar)
export(commonSeqsPlot)
export(commonSeqsVenn)
export(differentialAbundance)
export(exportFasta)
export(geneFreq)
export(lorenzCurve)
export(mergeFiles)
export(pairwisePlot)
export(phyloTree)
export(productive)
export(productiveSeq)
export(readImmunoSeq)
export(removeSeq)
export(searchPublished)
export(searchSeq)
export(seqMatrix)
export(similarityMatrix)
export(similarityScore)
export(topFreq)
export(topSeqs)
export(topSeqsPlot)
export(uniqueSeqs)
import(LymphoSeqDB)
import(UpSetR)
import(ggplot2)
import(ggtree)
import(msa)
importFrom(Biostrings,AAStringSet)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,writeXStringSet)
importFrom(RColorBrewer,brewer.pal)
importFrom(VennDiagram,draw.pairwise.venn)
importFrom(VennDiagram,draw.triple.venn)
importFrom(circlize,chordDiagram)
importFrom(circlize,colorRamp2)
importFrom(data.table,fread)
importFrom(dplyr,group_by)
importFrom(dplyr,summarise)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(ineq,Gini)
importFrom(ineq,Lc)
importFrom(phangorn,NJ)
importFrom(plyr,ldply)
importFrom(plyr,llply)
importFrom(reshape,melt.data.frame)
importFrom(stats,aggregate)
importFrom(stats,fisher.test)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stringdist,stringdist)
importFrom(utils,adist)