Browse code

Changed dyplyr to importFrom

davidcoffey authored on 10/04/2017 01:53:24
Showing 2 changed files

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@@ -33,7 +33,6 @@ export(topSeqsPlot)
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 export(uniqueSeqs)
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 import(LymphoSeqDB)
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 import(UpSetR)
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-import(dplyr)
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 import(ggplot2)
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 import(ggtree)
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 import(msa)
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@@ -46,6 +45,8 @@ importFrom(VennDiagram,draw.triple.venn)
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 importFrom(circlize,chordDiagram)
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 importFrom(circlize,colorRamp2)
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 importFrom(data.table,fread)
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+importFrom(dplyr,group_by)
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+importFrom(dplyr,summarise)
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 importFrom(grid,grid.draw)
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 importFrom(grid,grid.newpage)
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 importFrom(ineq,Gini)
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@@ -31,9 +31,8 @@
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 #' @seealso Refer to the LymphoSeqDB package for details regarding the 
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 #' prevalenceTRB and publishedTRB database.
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 #' @export
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-#' @import dplyr
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-#' @import LymphoSeqDB
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 #' @import LymphoSeqDB
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+#' @importFrom dplyr group_by summarise
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 topFreq <- function(productive.aa, percent = 0.1) {
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     if(any(unlist(lapply(productive.aa, function(x) 
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         x[, "aminoAcid"] == "" | grepl("\\*", x[, "aminoAcid"]) |