Package: LymphoSeq
Title: Analyze high-throughput sequencing of T and B cell receptors
Version: 1.2.0
Author: David Coffey <dcoffey@fredhutch.org>
Maintainer: David Coffey <dcoffey@fredhutch.org>
Description: This R package analyzes high-throughput sequencing of T
        and B cell receptor complementarity determining region 3 (CDR3)
        sequences generated by Adaptive Biotechnologies' ImmunoSEQ
        assay.  Its input comes from tab-separated value (.tsv) files
        exported from the ImmunoSEQ analyzer.
Depends: R (>= 3.2), LymphoSeqDB
Imports: data.table, plyr, dplyr, reshape, VennDiagram, ggplot2, ineq,
        RColorBrewer, circlize, grid, utils, stats
License: Artistic-2.0
LazyData: true
RoxygenNote: 5.0.1
Suggests: knitr, pheatmap, wordcloud
VignetteBuilder: knitr
biocViews: Software, Technology, Sequencing, TargetedResequencing
NeedsCompilation: no