% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/commonSeqs.R
\title{Common sequences in two or more samples}
commonSeqs(samples, productive.aa)
\item{samples}{A character vector of two or more sample names in 

\item{productive.aa}{A list of productive amino acid sequences generated
by the LymphoSeq function productiveSeq where aggregate = "aminoAcid".}
Returns a data frame of the common sequences between two or more files 
displaying their frequencies in each.
Creates a data frame of the common sequences in two or more samples, reporting 
their frequencies in each.
file.path <- system.file("extdata", "TCRB_sequencing", package = "LymphoSeq")

file.list <- readImmunoSeq(path = file.path)

productive.aa <- productiveSeq(file.list = file.list, aggregate = "aminoAcid")

commonSeqs(samples = c("TCRB_Day0_Unsorted", "TCRB_Day32_Unsorted"), 
   productive.aa = productive.aa)