Package: LymphoSeq
 Title: Analyze high-throughput sequencing of T and B cell receptors
 Version: 1.2.0
 Author: David Coffey <>
 Maintainer: David Coffey <>
 Description: This R package analyzes high-throughput sequencing of T
         and B cell receptor complementarity determining region 3 (CDR3)
         sequences generated by Adaptive Biotechnologies' ImmunoSEQ
         assay.  Its input comes from tab-separated value (.tsv) files
         exported from the ImmunoSEQ analyzer.
 Depends: R (>= 3.2), LymphoSeqDB
 Imports: data.table, plyr, dplyr, reshape, VennDiagram, ggplot2, ineq,
         RColorBrewer, circlize, grid, utils, stats
 License: Artistic-2.0
 LazyData: true
 RoxygenNote: 5.0.1
 Suggests: knitr, pheatmap, wordcloud
 VignetteBuilder: knitr
 biocViews: Software, Technology, Sequencing, TargetedResequencing
 NeedsCompilation: no