1. KEGGlincs
  2. DESCRIPTION
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bump x.y.z version to odd y following creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 14:50:09
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 Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.26.0
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+Version: 1.27.0
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 Date: 2016-06-02
6 6 
 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

J Wokaty authored on 25/04/2023 14:50:09
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DESCRIPTION
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.25.0
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+Version: 1.26.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:14:35
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.24.0
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+Version: 1.25.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

J Wokaty authored on 01/11/2022 15:14:35
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 Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.23.0
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+Version: 1.24.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:36:19
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.22.0
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+Version: 1.23.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

Nitesh Turaga authored on 26/04/2022 15:36:19
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DESCRIPTION
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.21.0
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+Version: 1.22.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:30:32
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.20.0
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+Version: 1.21.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

Nitesh Turaga authored on 26/10/2021 16:30:32
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DESCRIPTION
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.19.0
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+Version: 1.20.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump x.y.z version to odd y following creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:23:35
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.18.0
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+Version: 1.19.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_13 branch

Nitesh Turaga authored on 19/05/2021 16:23:35
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DESCRIPTION
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.17.0
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+Version: 1.18.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:18:22
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.16.0
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+Version: 1.17.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

Nitesh Turaga authored on 27/10/2020 15:18:22
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DESCRIPTION
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.15.0
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+Version: 1.16.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to odd y following creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 19:02:30
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DESCRIPTION
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 Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.14.0
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+Version: 1.15.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

Nitesh Turaga authored on 27/04/2020 19:02:30
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DESCRIPTION
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 Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.13.0
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+Version: 1.14.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to odd y after creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:42:08
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DESCRIPTION
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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-Version: 1.12.0
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+Version: 1.13.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

Nitesh Turaga authored on 29/10/2019 17:10:09
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.11.0
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+Version: 1.12.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 16:13:57
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DESCRIPTION
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 Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.10.0
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+Version: 1.11.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

Nitesh Turaga authored on 02/05/2019 15:54:04
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DESCRIPTION
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 Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
-Version: 1.9.1
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+Version: 1.10.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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merge

Merge remote-tracking branch 'upstream/master'

# Conflicts:
# DESCRIPTION

Shana White authored on 26/03/2019 17:54:19
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fix version to bump devel

Shana White authored on 26/03/2019 17:46:28
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DESCRIPTION
History View file @ f401844
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.8.1
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+Version: 1.9.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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fix add_edge_data, bump version

Shana White authored on 26/03/2019 17:07:42
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DESCRIPTION
History View file @ b66d1da
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@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.7.2
5 
+Version: 1.8.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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@@ -11,7 +11,7 @@ Description: See what is going on 'under the hood' of KEGG pathways by
11 11 
         obtained from KGML files.
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 License: GPL-3
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 LazyData: true
14 
-RoxygenNote: 6.0.1
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+RoxygenNote: 6.1.1
15 15 
 Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0)
16 16 
 SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8)
17 17 
 Suggests: BiocInstaller (>= 1.20.3), knitr, graph
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bump x.y.z versions to odd y after creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:54:36
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DESCRIPTION
History View file @ c7bd5b5
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.8.0
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+Version: 1.9.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch

vobencha authored on 30/10/2018 15:42:02
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DESCRIPTION
History View file @ 4c5235e
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.7.3
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+Version: 1.8.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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replace BiocInstaller biocLite mentions with BiocManager

LiNk-NY authored on 30/08/2018 17:51:12
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DESCRIPTION
History View file @ e67a9df
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.7.2
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+Version: 1.7.3
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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@@ -14,7 +14,7 @@ LazyData: true
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 RoxygenNote: 6.0.1
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 Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0)
16 16 
 SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8)
17 
-Suggests: BiocInstaller (>= 1.20.3), knitr, graph
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+Suggests: BiocManager (>= 1.20.3), knitr, graph
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 biocViews: NetworkInference, GeneExpression, DataRepresentation,
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         ThirdPartyClient,CellBiology,GraphAndNetwork,Pathways,KEGG,Network
20 20 
 Imports:
Browse code

remove malfunctioning functions and reset to known working version

Shana White authored on 03/08/2018 17:11:46
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DESCRIPTION
History View file @ 612309a
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.7.1
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+Version: 1.7.2
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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delete malfunctioning function and reset changes to 'base' version

Shana White authored on 03/08/2018 16:44:37
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DESCRIPTION
History View file @ 6972f5a
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.7.1
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+Version: 1.7.2
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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test

Shana White authored on 23/07/2018 19:08:20
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DESCRIPTION
History View file @ 6a3e2a7
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.6.1
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+Version: 1.7.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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test update devel

Shana White authored on 23/07/2018 19:05:27
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DESCRIPTION
History View file @ 0b08529
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.5.1
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+Version: 1.6.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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Try to correct Version number again

Shana White authored on 11/07/2018 15:53:46
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History View file @ 5ee6bef
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.6.1
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+Version: 1.5.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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Fix merge conflict and correct Version number

Shana White authored on 11/07/2018 15:47:05
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DESCRIPTION
History View file @ b9f9b7b
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@@ -2,11 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-<<<<<<< HEAD
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-Version: 1.5.1
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-=======
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-Version: 1.7.1
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->>>>>>> upstream/master
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+Version: 1.6.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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mend merge

Shana White authored on 11/07/2018 15:41:51
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Bump version number to initiate bug fix

Shana White authored on 10/07/2018 15:58:15
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DESCRIPTION
History View file @ 19817d2
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.5.0
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+Version: 1.5.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump version number

Shana White authored on 10/07/2018 15:37:15
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DESCRIPTION
History View file @ 289fabb
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.7.0
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+Version: 1.7.1
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:41:42
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DESCRIPTION
History View file @ 1cefba2
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.6.0
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+Version: 1.7.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

vobencha authored on 30/04/2018 14:35:44
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DESCRIPTION
History View file @ aeff213
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@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.5.0
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+Version: 1.6.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z versions to odd y after creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:54:21
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DESCRIPTION
History View file @ f5c9cde
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.4.0
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+Version: 1.5.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
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bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch

Hervé Pagès authored on 30/10/2017 16:41:22
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DESCRIPTION
History View file @ edfcd23
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@@ -2,7 +2,7 @@ Package: KEGGlincs
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 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.3.2
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+Version: 1.4.0
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump version

From: Shana White <vandersm@mail.uc.edu>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@130420 bc3139a8-67e5-0310-9ffc-ced21a209358

Shana White authored on 15/06/2017 17:58:40
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DESCRIPTION
History View file @ aa79dfb
... ... 
@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
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 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.3.1
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+Version: 1.3.2
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 Date: 2016-06-02
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 Author: Shana White
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 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

Add in parameter arguments for 'tidy_edge'; propogate changes and update necessary files

From: Shana White <vandersm@mail.uc.edu>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@130419 bc3139a8-67e5-0310-9ffc-ced21a209358

Shana White authored on 15/06/2017 17:58:33
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DESCRIPTION
History View file @ 5b350cf
... ... 
@@ -19,5 +19,5 @@ biocViews: NetworkInference, GeneExpression, DataRepresentation,
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         ThirdPartyClient,CellBiology,GraphAndNetwork,Pathways,KEGG,Network
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 Imports:
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         AnnotationDbi,KEGGgraph,igraph,plyr,gtools,httr,RJSONIO,KEGGREST,
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-        methods,graphics,stats,utils, XML
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+        methods,graphics,stats,utils, XML, grDevices
23 23 
 VignetteBuilder: knitr
Browse code

Bump version for cyto_vis update and tidy_edge function

From: Shana White <vandersm@mail.uc.edu>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@130302 bc3139a8-67e5-0310-9ffc-ced21a209358

Shana White authored on 13/06/2017 16:35:22
Showing 1 changed files
DESCRIPTION
History View file @ b0e21ab
... ... 
@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.3.0
5 
+Version: 1.3.1
6 6 
 Date: 2016-06-02
7 7 
 Author: Shana White
8 8 
 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump x.y.z versions to odd y after creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@129129 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:50:57
Showing 1 changed files
DESCRIPTION
History View file @ c17c1d0
... ... 
@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.2.0
5 
+Version: 1.3.0
6 6 
 Date: 2016-06-02
7 7 
 Author: Shana White
8 8 
 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

bump x.y.z versions to even y prior to creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@129126 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 24/04/2017 19:25:24
Showing 1 changed files
DESCRIPTION
History View file @ e33ef3b
... ... 
@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
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         [option]
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-Version: 1.1.0
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+Version: 1.2.0
6 6 
 Date: 2016-06-02
7 7 
 Author: Shana White
8 8 
 Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
Browse code

update documentation for newer roxygen version

From: vandersm <vandersm@mail.uc.edu>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@127888 bc3139a8-67e5-0310-9ffc-ced21a209358

Shana White authored on 30/03/2017 20:47:47
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DESCRIPTION
History View file @ 2de397a
... ... 
@@ -11,7 +11,7 @@ Description: See what is going on 'under the hood' of KEGG pathways by
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         obtained from KGML files.
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 License: GPL-3
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 LazyData: true
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-RoxygenNote: 5.0.1
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+RoxygenNote: 6.0.1
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 Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0)
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 SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8)
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 Suggests: BiocInstaller (>= 1.20.3), knitr, graph
Browse code

handle suggests/Imports issues

From: vandersm <vandersm@mail.uc.edu>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@127389 bc3139a8-67e5-0310-9ffc-ced21a209358

Shana White authored on 14/03/2017 18:21:45
Showing 1 changed files
DESCRIPTION
History View file @ d39908b
... ... 
@@ -14,10 +14,10 @@ LazyData: true
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 RoxygenNote: 5.0.1
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 Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0)
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 SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8)
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-Suggests: BiocInstaller (>= 1.20.3), knitr, rmarkdown, graph
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+Suggests: BiocInstaller (>= 1.20.3), knitr, graph
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 biocViews: NetworkInference, GeneExpression, DataRepresentation,
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         ThirdPartyClient,CellBiology,GraphAndNetwork,Pathways,KEGG,Network
20 20 
 Imports:
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         AnnotationDbi,KEGGgraph,igraph,plyr,gtools,httr,RJSONIO,KEGGREST,
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-        methods,graphics,stats,utils
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+        methods,graphics,stats,utils, XML
23 23 
 VignetteBuilder: knitr
Browse code

add Dr Medvedovic to DESC as maintainer

From: vandersm <vandersm@mail.uc.edu>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@124832 bc3139a8-67e5-0310-9ffc-ced21a209358

Shana White authored on 05/12/2016 19:31:33
Showing 1 changed files
DESCRIPTION
History View file @ 7887652
... ... 
@@ -5,7 +5,7 @@ Title: Visualize all edges within a KEGG pathway and overlay LINCS data
5 5 
 Version: 1.1.0
6 6 
 Date: 2016-06-02
7 7 
 Author: Shana White
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-Maintainer: Shana White <vandersm@mail.uc.edu>
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+Maintainer: Shana White <vandersm@mail.uc.edu>, Mario Medvedovic <medvedm@ucmail.uc.edu>
9 9 
 Description: See what is going on 'under the hood' of KEGG pathways by
10 10 
         explicitly re-creating the pathway maps from information
11 11 
         obtained from KGML files.
Browse code

bump x.y.z versions to odd 'y' after creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@122712 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 19:10:43
Showing 1 changed files
DESCRIPTION
History View file @ 397a304
... ... 
@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 4 
         [option]
5 
-Version: 1.0.0
5 
+Version: 1.1.0
6 6 
 Date: 2016-06-02
7 7 
 Author: Shana White
8 8 
 Maintainer: Shana White <vandersm@mail.uc.edu>
Browse code

bump x.y.z versions to even 'y' prior to creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@122710 bc3139a8-67e5-0310-9ffc-ced21a209358

Herve Pages authored on 17/10/2016 18:45:06
Showing 1 changed files
DESCRIPTION
History View file @ 75ab1a0
... ... 
@@ -2,7 +2,7 @@ Package: KEGGlincs
2 2 
 Type: Package
3 3 
 Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 4 
         [option]
5 
-Version: 0.99.4
5 
+Version: 1.0.0
6 6 
 Date: 2016-06-02
7 7 
 Author: Shana White
8 8 
 Maintainer: Shana White <vandersm@mail.uc.edu>
Browse code

Adding KEGGlincs, flowPloidy, MAST, PathoStat, matter, MoonlightR, psichomics, anamiR, MutationalPatterns, HelloRanges, crisprseekplus, annotatr, meshes

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@122278 bc3139a8-67e5-0310-9ffc-ced21a209358

Martin Morgan authored on 12/10/2016 17:44:52
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DESCRIPTION
History View file @ 4614338
1 1 
new file mode 100644
... ... 
@@ -0,0 +1,23 @@
1 
+Package: KEGGlincs
2 
+Type: Package
3 
+Title: Visualize all edges within a KEGG pathway and overlay LINCS data
4 
+        [option]
5 
+Version: 0.99.4
6 
+Date: 2016-06-02
7 
+Author: Shana White
8 
+Maintainer: Shana White <vandersm@mail.uc.edu>
9 
+Description: See what is going on 'under the hood' of KEGG pathways by
10 
+        explicitly re-creating the pathway maps from information
11 
+        obtained from KGML files.
12 
+License: GPL-3
13 
+LazyData: true
14 
+RoxygenNote: 5.0.1
15 
+Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0)
16 
+SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8)
17 
+Suggests: BiocInstaller (>= 1.20.3), knitr, rmarkdown, graph
18 
+biocViews: NetworkInference, GeneExpression, DataRepresentation,
19 
+        ThirdPartyClient,CellBiology,GraphAndNetwork,Pathways,KEGG,Network
20 
+Imports:
21 
+        AnnotationDbi,KEGGgraph,igraph,plyr,gtools,httr,RJSONIO,KEGGREST,
22 
+        methods,graphics,stats,utils
23 
+VignetteBuilder: knitr