@@ -1,7 +1,6 @@

 Package: KEGGlincs

 Type: Package

 Title: Visualize all edges within a KEGG pathway and overlay LINCS data

-        [option]

 Version: 1.9.1

 Date: 2016-06-02

 Author: Shana White

@@ -14,7 +13,7 @@ LazyData: true

 RoxygenNote: 6.1.1

 Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0)

 SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8)

-Suggests: BiocInstaller (>= 1.20.3), knitr, graph

+Suggests: BiocManager (>= 1.20.3), knitr, graph

 biocViews: NetworkInference, GeneExpression, DataRepresentation,

         ThirdPartyClient,CellBiology,GraphAndNetwork,Pathways,KEGG,Network

 Imports:

@@ -10,11 +10,12 @@ Installation:

 ```{r}

 #Make sure that the following bioconductor packages are installed

-source("http://bioconductor.org/biocLite.R")

-biocLite(c("hgu133a.db", "KEGGgraph", "KEGGREST", "KOdata"))

+if (!requireNamespace("BiocManager", quietly=TRUE))

+    install.packages("BiocManager")

+BiocManager::install(c("hgu133a.db", "KEGGgraph", "KEGGREST", "KOdata"))

 #Download package

-biocLite("KEGGlincs")

+BiocManager::install("KEGGlincs")

 #Load/activate package for use

 library(KEGGlincs)