From: vandersm <vandersm@mail.uc.edu>
git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KEGGlincs@127389 bc3139a8-67e5-0310-9ffc-ced21a209358
... | ... |
@@ -14,10 +14,10 @@ LazyData: true |
14 | 14 |
RoxygenNote: 5.0.1 |
15 | 15 |
Depends: R (>= 3.3), KOdata, hgu133a.db, org.Hs.eg.db (>= 3.3.0) |
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SystemRequirements: Cytoscape (>= 3.3.0), Java (>= 8) |
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-Suggests: BiocInstaller (>= 1.20.3), knitr, rmarkdown, graph |
|
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+Suggests: BiocInstaller (>= 1.20.3), knitr, graph |
|
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biocViews: NetworkInference, GeneExpression, DataRepresentation, |
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ThirdPartyClient,CellBiology,GraphAndNetwork,Pathways,KEGG,Network |
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Imports: |
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AnnotationDbi,KEGGgraph,igraph,plyr,gtools,httr,RJSONIO,KEGGREST, |
22 |
- methods,graphics,stats,utils |
|
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+ methods,graphics,stats,utils, XML |
|
23 | 23 |
VignetteBuilder: knitr |
... | ... |
@@ -3,7 +3,6 @@ |
3 | 3 |
export(KEGG_lincs) |
4 | 4 |
export(add_KEGG_drugs) |
5 | 5 |
export(add_edge_data) |
6 |
-export(add_kegg_drugs) |
|
7 | 6 |
export(cyto_vis) |
8 | 7 |
export(edge_mapping_info) |
9 | 8 |
export(expand_KEGG_edges) |
... | ... |
@@ -22,6 +21,7 @@ import(AnnotationDbi) |
22 | 21 |
import(KEGGREST) |
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import(KOdata) |
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import(RJSONIO) |
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+import(XML) |
|
25 | 25 |
import(hgu133a.db) |
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import(httr) |
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import(methods) |
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@@ -4,6 +4,7 @@ |
4 | 4 |
#' @param pathwayid A KEGG pathway ID of the form "hsa12345" |
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#' (only human pathways currently) |
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#' @return A data.frame object with either disease or drug information |
7 |
+#' @importFrom XML readHTMLTable |
|
7 | 8 |
#' @export |
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#' @examples |
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#' RA_drug_table <- get_drug_table("hsa05323") |