deleted file mode 100644

@@ -1,97 +0,0 @@

-#!/usr/bin/env bash

-

-# This script should be run after cloning, it will update the remote

-# information so that git svn commands work properly for both the master and

-# release branches.

-

-set -eou pipefail

-IFS=$'\n\t'

-

-set +u

-package=$1

-

-# otherwise use the default repo name

-if [ -z "$package" ];then

-  package=$(git remote -v | perl -ne 'if (m!/([^/]+?)(?:.git)?\s!) { print $1; exit}')

-fi

-set -u

-

-base_url="https://hedgehog.fhcrc.org/bioconductor/"

-

-is_mirror_clone () {

-  git remote show origin | grep -i -q bioconductor-mirror

-  return $?

-}

-

-add_release_tracking () {

-  local branch=$1

-  shift

-  local remote=$1

-  shift

-  for release_branch in $@; do

-    svn_branch=$(echo $release_branch | perl -ne 'if (/release-(\d+)\.(\d+)/) { print "RELEASE_$1_$2"; }')

-    svn_url="$base_url/branches/$svn_branch/madman/Rpacks/$package"

-    git config --add svn-remote.$release_branch.url $svn_url

-    git config --add svn-remote.$release_branch.fetch :refs/remotes/git-svn-$release_branch

-    git update-ref refs/remotes/git-svn-$release_branch refs/$remote/$release_branch

-  done

-}

-

-add_branch () {

-  set +eu

-  local local_branch=$1

-  local remote_branch=${2-$local_branch}

-  if ! git branch --track $local_branch bioc/$remote_branch  2>/dev/null 1>&2; then

-    1>&2 cat <<END

-$local_branch already exists, create a custom branch to track bioc/$remote_branch with

-  \`git branch --track NEW_NAME bioc/$remote_branch\`

-END

-  fi

-}

-

-if is_mirror_clone; then

-    git checkout master

-    git svn init "$base_url/trunk/madman/Rpacks/$package"

-    git update-ref refs/remotes/git-svn refs/remotes/origin/master

-    git svn rebase

-    git remote add bioc https://github.com/Bioconductor-mirror/${package}.git

-    git fetch bioc 2>/dev/null 1>&2

-

-    release_branches=$(git branch -r | perl -ne 'if (m!origin/(release-.*)!) { print $1, "\n" }')

-    for release_branch in ${release_branches[@]}; do

-      add_branch $release_branch

-    done

-

-    add_release_tracking origin heads $release_branches

-

-    cat <<\END

-Commit to git as normal, when you want to push your commits to svn

-  1. `git svn rebase` to get the latest SVN changes.

-  2. `git svn dcommit --add-author-from` to commit your changes to SVN.

-END

-

-else

-    git remote add bioc "https://github.com/Bioconductor-mirror/${package}.git"

-    git fetch bioc 2>/dev/null 1>&2

-    git config --add svn-remote.devel.url "$base_url/trunk/madman/Rpacks/$package"

-    git config --add svn-remote.devel.fetch :refs/remotes/git-svn-devel

-    git update-ref refs/remotes/git-svn-devel refs/remotes/bioc/master

-

-    release_branches=$(git branch -r | perl -ne 'if (m!bioc/(release-.*)!) { print $1, "\n" }')

-    add_release_tracking bioc remotes/bioc $release_branches

-

-    for release_branch in ${release_branches[@]}; do

-      add_branch $release_branch

-    done

-    add_branch devel master

-    cat <<\END

-Commit to git as normal, when you want to push your commits to svn

-  1. `git checkout devel` to switch to the devel branch. (use release-X.X for

-        release branches)

-  2. `git svn rebase` to get the latest SVN changes.

-  3. `git merge master --log` to merge your changes from the master branch

-        or skip this step and work directly on the current branch.

-  4. `git svn dcommit --add-author-from` to sync and commit

-        your changes to svn.

-END

-fi