man/path_genes_by_cell_type.Rd
4614338b
 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/path_genes_by_cell_type.R
 \name{path_genes_by_cell_type}
 \alias{path_genes_by_cell_type}
 \title{See how many pathway gene knock-outs are available from data}
 \usage{
 path_genes_by_cell_type(KEGG_mappings, pert_time = 96, get_KOs = FALSE,
   generate_plot = TRUE)
 }
 \arguments{
 \item{KEGG_mappings}{KEGG_mappings The data.frame object generated by the 
 function expand_KEGG_mappings}
 
 \item{pert_time}{Choose from (6,24,48,96,120,144,168)}
 
 \item{get_KOs}{Logical indicator to have data frame returned}
 
 \item{generate_plot}{Logical indicator to generate histogram}
 }
 \value{
 A plot depicting percentage of pathway genes knocked-out by 
 cell line and a data frame object listing the genes [by cell line]
 }
 \description{
 Check quantity of data across cell lines available from LINCS
  corresponding to the pathway of interest
 }
 \examples{
 p53_KGML <- get_KGML("hsa04115")
 p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML)
 
 path_genes_by_cell_type(p53_KEGG_mappings)
 }