1. KEGGREST
  2. Graph
Graph of KEGGREST
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  • 192ddee (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:52:29 -0400;
  • 2676f9d (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2023-10-24 09:52:29 -0400;
  • 8b7c45b (origin/RELEASE_3_17, RELEASE_3_17) version bump 1.40.1 by LiNk-NY <marcel.ramos@roswellpark.org> 2023-09-28 16:25:09 -0400;
  • c7f5757 update NEWS by LiNk-NY <marcel.ramos@roswellpark.org> 2023-09-28 16:25:07 -0400;
  • 4178dbc remove escaped #s in Rd file by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 13:29:36 -0400;
  • 7436ce1 fix: correct the url parsing by Ali Sajid Imami <395482+AliSajid@users.noreply.github.com> 2023-09-21 20:09:40 -0400;
  • 2b19294 version bump 1.41.4 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 14:06:21 -0400;
  • 27e262e add unit tests for keggCompounds by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 14:06:14 -0400;
  • c251881 Add man page for keggCompounds function by Kristina Riemer <kristina.riemer@weecology.org> 2021-11-30 13:15:51 -0700;
  • 9ccdfaf Rename function for getting list of compounds from pathway by Kristina Riemer <kristina.riemer@weecology.org> 2021-11-30 13:00:17 -0700;
  • 9886c91 Fix indentation error by Kristina Riemer <kristina.riemer@weecology.org> 2021-11-30 12:52:33 -0700;
  • e0e117c Add function for getting compound list from pathway by Kristina Riemer <kristina.riemer@weecology.org> 2021-07-08 13:48:50 -0700;
  • af36ddf version bump 1.41.3 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 13:29:41 -0400;
  • 1f4ccad remove escaped #s in Rd file by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 13:29:36 -0400;
  • 57dce7b remove test_KEGGREST_package.R file by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 13:29:14 -0400;
  • d078fd4 version bump 1.41.2 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 13:05:00 -0400;
  • 696d03e add stop_for_status in .get.kegg.url by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 13:04:56 -0400;
  • 2e15385 version bump 1.41.1 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 12:57:18 -0400;
  • e59771c update NEWS by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 12:58:44 -0400;
  • d0844c9 using httr always with default by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-09-25 12:56:23 -0400;
  • f900a2f Merge pull request <a href="#22">#22</a> from CogDisResLab/devel by Marcel Ramos <LiNk-NY@users.noreply.github.com> 2023-09-25 12:49:31 -0400;
  • b1dcf1d fix: correct the url parsing by Ali Sajid Imami <395482+AliSajid@users.noreply.github.com> 2023-09-21 20:09:40 -0400;
  • b810cd1 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:25:16 -0400;
  • 1bdb0b5 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:25:16 -0400;
  • 1275d13 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:46 -0400;
  • 4dfbff9 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:07:46 -0400;
  • 1827cde (origin/RELEASE_3_15, RELEASE_3_15) Fix color.pathway.by.objects by lshep <lori.shepherd@roswellpark.org> 2022-07-08 11:22:18 -0400;
  • 8f21a71 Fix color.pathway.by.objects by lshep <lori.shepherd@roswellpark.org> 2022-07-08 11:20:48 -0400;
  • e4b7231 version bump for PR from @kozo2 that Fixes <a href="#7">#7</a> by lshep <lori.shepherd@roswellpark.org> 2022-06-08 13:15:16 -0400;
  • 113537d Replace http to https by Kozo Nishida <kozo.nishida@gmail.com> 2022-06-07 02:27:14 +0900;
  • 8ddcc9e version bump for PR from @kozo2 for http to https by lshep <lori.shepherd@roswellpark.org> 2022-06-08 13:12:48 -0400;
  • 71c9587 Merge branch 'kozo2-patch-1' into RELEASE_3_15 by lshep <lori.shepherd@roswellpark.org> 2022-06-08 13:12:13 -0400;
  • d230a30 Merge branch 'patch-1' of https://github.com/kozo2/KEGGREST into kozo2-patch-1 by lshep <lori.shepherd@roswellpark.org> 2022-06-08 13:06:47 -0400;
  • 5774235 version bump for cherry-pick PR from @zielinskipp by lshep <lori.shepherd@roswellpark.org> 2022-06-08 12:58:30 -0400;
  • dc98b21 changes url in color.pathway.by.object by zielinskipp <greenryuninja@gmail.com> 2022-06-07 12:40:28 +0200;
  • f71e4d3 version bump for PR from @zielinskipp by lshep <lori.shepherd@roswellpark.org> 2022-06-08 12:56:25 -0400;
  • 1ed69f6 Merge branch 'zielinskipp-master' by lshep <lori.shepherd@roswellpark.org> 2022-06-08 12:55:50 -0400;
  • 9620bbc changes url in color.pathway.by.object by zielinskipp <greenryuninja@gmail.com> 2022-06-07 12:40:28 +0200;
  • f3b2701 Replace http to https by Kozo Nishida <kozo.nishida@gmail.com> 2022-06-07 02:27:14 +0900;
  • 5fb6957 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:13:17 +0000;
  • 591818b bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:13:17 +0000;
  • aa75995 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:06:18 +0000;
  • 2056750 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:06:18 +0000;
  • c07c047 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:55:14 +0000;
  • 25656cd (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:55:14 +0000;
  • 4f2efed trying with minimal changes to unit tests; main problem is ENVIRON database... by vjcitn <stvjc@channing.harvard.edu> 2021-05-05 08:49:07 -0400;
  • a516555 version bump by Martin Morgan <Martin.Morgan@RoswellPark.org> 2020-11-23 12:04:39 -0500;
  • fd9970e (origin/RELEASE_3_12, RELEASE_3_12) version bump, acknowledgement, updated Title / Description by Martin Morgan <Martin.Morgan@RoswellPark.org> 2020-11-23 12:01:02 -0500;
  • bfd08a1 minor tweaks by Martin Morgan <Martin.Morgan@RoswellPark.org> 2020-11-23 12:00:10 -0500;
  • d8d399c use POST to fetch color maps by jvolkening <jdv@base2bio.com> 2020-11-22 23:35:37 -0600;
  • 5dcd9b0 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:48:48 -0400;
  • af9f5b5 bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-10-27 10:48:48 -0400;
  • 37708c6 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:32:43 +0000;
  • 9dff940 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2020-04-27 18:32:43 +0000;
  • 56d6223 (origin/RELEASE_3_10, RELEASE_3_10) Version bump for FixIssue3 by lshep <lori.shepherd@roswellpark.org> 2019-11-06 07:54:29 -0500;
  • cb4f880 Fixes <a href="#3">#3</a> by lshep <lori.shepherd@roswellpark.org> 2019-11-06 07:50:40 -0500;
  • 678d5e7 Version bump for FixIssue3 by lshep <lori.shepherd@roswellpark.org> 2019-11-06 07:51:35 -0500;
  • 50a77e3 Fixes <a href="#3">#3</a> by lshep <lori.shepherd@roswellpark.org> 2019-11-06 07:50:40 -0500;
  • 9656cff bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:36:29 -0400;
  • b512c46 bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-10-29 13:08:36 -0400;
  • bbc3ef4 (origin/RELEASE_3_9, RELEASE_3_9) Fixed unit tests by Daniel Van Twisk <daniel.vantwisk@roswellpark.org> 2019-10-08 11:43:04 -0400;
  • dbba107 Fixed unit tests by Daniel Van Twisk <daniel.vantwisk@roswellpark.org> 2019-10-08 11:38:58 -0400;
  • 232a0de bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 12:11:19 -0400;
  • 236d812 bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2019-05-02 11:53:40 -0400;
  • 0b50a7c bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:54:31 -0400;
  • 4374507 (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <vobencha@gmail.com> 2018-10-30 11:41:50 -0400;
  • 62b4519 (origin/RELEASE_3_7, RELEASE_3_7) Update failing test by lshep <lori.shepherd@roswellpark.org> 2018-09-20 13:32:38 -0400;
  • 5d4e360 Update test by lshep <lori.shepherd@roswellpark.org> 2018-09-20 13:24:26 -0400;
  • 9053fdc version bump by Martin Morgan <martin.morgan@roswellpark.org> 2018-06-26 17:00:19 -0400;
  • 78ac3af use https:// for www.kegg.jp by Martin Morgan <martin.morgan@roswellpark.org> 2018-06-26 16:51:33 -0400;
  • dee2d9c version bump by Martin Morgan <martin.morgan@roswellpark.org> 2018-06-26 16:52:51 -0400;
  • 62804e2 https:// use in vignettes by Martin Morgan <martin.morgan@roswellpark.org> 2018-06-26 16:52:34 -0400;
  • 1912600 more modest output in examples by Martin Morgan <martin.morgan@roswellpark.org> 2018-06-26 16:52:11 -0400;
  • 0a059db use https:// for www.kegg.jp by Martin Morgan <martin.morgan@roswellpark.org> 2018-06-26 16:51:33 -0400;
  • ad86b8a bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:41:39 -0400;
  • 1fc9632 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <valerie.obenchain@roswellpark.org> 2018-04-30 10:35:28 -0400;
  • eb0023a version bump by Martin Morgan <martin.morgan@roswellpark.org> 2018-02-11 08:33:18 -0500;
  • 38f8424 typo in documentation by Martin Morgan <martin.morgan@roswellpark.org> 2018-02-10 07:19:00 -0500;
  • e734f12 keggConv supports more than 100 identifiers by Martin Morgan <martin.morgan@roswellpark.org> 2018-02-10 07:13:28 -0500;
  • 580c126 (origin/RELEASE_3_6, RELEASE_3_6) Fix broken unit test by lshep <shepherl@gmail.com> 2018-02-05 08:16:46 -0500;
  • c4739b8 Fix failing Unit Test by lshep <shepherl@gmail.com> 2018-02-05 07:55:43 -0500;
  • 8995598 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:52:40 -0400;
  • f6e6f19 bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <hpages@fredhutch.org> 2017-10-30 12:39:59 -0400;
  • 9b43e15 Updated listDatabases(), fixed BiocCheck warnings. by Daniel Van Twisk <daniel.vantwisk@roswellpark.org> 2017-08-10 17:13:08 +0000;
  • ed48de0 (origin/RELEASE_3_5, RELEASE_3_5) Updated listDatabases(), fixed BiocCheck warnings. by Daniel Van Twisk <daniel.vantwisk@roswellpark.org> 2017-08-10 17:12:34 +0000;
  • bd83b09 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:50:57 +0000;
  • d3a9fde Creating branch for BioC 3.5 release by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:45:44 +0000;
  • c83ba32 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <hpages@fhcrc.org> 2017-04-24 19:25:24 +0000;
  • f7650be (origin/RELEASE_3_4, RELEASE_3_4) port bug fix from devel -r127621; thanks to Alexey Sergushichev for the patch by Valerie Obenchain <vobencha@fhcrc.org> 2017-03-22 15:47:44 +0000;
  • 0549515 fix bug in keggList(); thanks to Alexey Sergushichev for the patch by Valerie Obenchain <vobencha@fhcrc.org> 2017-03-22 15:33:24 +0000;
  • 91c1be0 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:10:43 +0000;
  • 5c8f3f3 Creating branch for BioC 3.4 release by Herve Pages <hpages@fhcrc.org> 2016-10-17 19:00:47 +0000;
  • 67274e1 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <hpages@fhcrc.org> 2016-10-17 18:45:06 +0000;
  • 3abb0de (origin/RELEASE_3_3, RELEASE_3_3) fix unit tests re: rpair database (RP identifiers) was retired in 2016 by Valerie Obenchain <vobencha@fhcrc.org> 2016-10-02 17:40:50 +0000;
  • c459e01 update unit tests re: rpair database (RP identifiers) was discontinued in 2016 by Valerie Obenchain <vobencha@fhcrc.org> 2016-10-02 17:40:23 +0000;
  • b65fc42 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:18:19 +0000;
  • 4394d40 Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-15 20:14:22 +0000;
  • 5ab5a44 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:15:25 +0000;
  • 8cbe259 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-11 23:05:31 +0000;
  • 7bf7190 bump version after creating 3.3 branch by Dan Tenenbaum <dtenenba@fhcrc.org> 2016-05-03 21:30:44 +0000;