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[UPDATE] Update to fixed version 1.3.9

Giulia Pais authored on 25/10/2021 13:17:04
Showing9 changed files

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 Package: ISAnalytics
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 Title: Analyze gene therapy vector insertion sites data identified from genomics next generation sequencing reads for clonal tracking studies
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-Version: 1.3.8
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+Version: 1.3.9
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 Date: 2020-07-03
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 Authors@R: c(
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   person(given = "Andrea",
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 title: "NEWS"
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 output: github_document
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 ---
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+# ISAnalytics 1.3.9 (2021-10-25)
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+
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+## FIXES
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+
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+* Fixed issues with function that make use of BiocParallel that sometimes
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+failed on Windows platform
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+
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 # ISAnalytics 1.3.7 (2021-10-20)
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 ## NEW
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 NEWS
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 ================
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+# ISAnalytics 1.3.9 (2021-10-25)
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+
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+## FIXES
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+
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+-   Fixed issues with function that make use of BiocParallel that
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+    sometimes failed on Windows platform
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+
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 # ISAnalytics 1.3.7 (2021-10-20)
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 ## NEW
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@@ -157,7 +157,7 @@ import_single_Vispa2Matrix <- function(path,
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         BiocParallel::SnowParam(
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             tasks = length(chunks),
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             progressbar = getOption("ISAnalytics.verbose"),
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-            exportglobals = FALSE,
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+            exportglobals = TRUE,
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             stop.on.error = TRUE
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         )
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     } else {
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             stop.on.error = FALSE,
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             tasks = length(stats_paths$stats_files),
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             progressbar = getOption("ISAnalytics.verbose"),
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-            exportglobals = FALSE
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+            exportglobals = TRUE
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         )
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     } else {
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         p <- BiocParallel::MulticoreParam(
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             p <- BiocParallel::SnowParam(
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                 tasks = length(common_names),
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                 progressbar = getOption("ISAnalytics.verbose"),
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-                exportglobals = FALSE
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+                exportglobals = TRUE
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             )
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         } else {
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             p <- BiocParallel::MulticoreParam(
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@@ -519,7 +519,7 @@ integration_alluvial_plot <- function(x,
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             stop.on.error = FALSE,
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             progressbar = TRUE,
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             tasks = length(groups_to_plot),
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-            exportglobals = FALSE
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+            exportglobals = TRUE
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         )
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     } else {
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         BiocParallel::MulticoreParam(
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@@ -182,7 +182,7 @@ HSC_population_size_estimate <- function(x,
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             stop.on.error = FALSE,
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             tasks = length(x_subj_split),
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             progressbar = getOption("ISAnalytics.verbose"),
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-            exportglobals = FALSE
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+            exportglobals = TRUE
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         )
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     } else {
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         p <- BiocParallel::MulticoreParam(
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@@ -130,7 +130,7 @@ compute_near_integrations <- function(x,
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             stop.on.error = FALSE,
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             progressbar = TRUE,
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             tasks = length(split_to_process),
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-            exportglobals = FALSE
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+            exportglobals = TRUE
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         )
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     } else {
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         p <- BiocParallel::MulticoreParam(
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@@ -137,6 +137,13 @@ options("ISAnalytics.reports" = TRUE)
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 Show more
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 </summary>
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+# ISAnalytics 1.3.9 (2021-10-25)
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+
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+## FIXES
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+
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+-   Fixed issues with function that make use of BiocParallel that
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+    sometimes failed on Windows platform
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+
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 # ISAnalytics 1.3.7 (2021-10-20)
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 ## NEW