Package: INSPEcT
Type: Package
Title: Modeling RNA synthesis, processing and degradation with RNA-seq data
Version: 1.33.0
Date: 2020-08-09
Author: Stefano de Pretis
Maintainer: Stefano de Pretis <>, 
	Mattia Furlan <>
Description: INSPEcT (INference of Synthesis, Processing and 
	dEgradation rates from Transcriptomic data) RNA-seq data
	in time-course experiments or steady-state conditions, with
	or without the support of nascent RNA data.
License: GPL-2
Depends: R (>= 3.6), methods, Biobase, BiocParallel
Imports: pROC, deSolve, rootSolve, KernSmooth, gdata,
        GenomicFeatures, GenomicRanges, IRanges, BiocGenerics,
        GenomicAlignments, Rsamtools, S4Vectors, GenomeInfoDb,
        DESeq2, plgem, rtracklayer, SummarizedExperiment, 
        TxDb.Mmusculus.UCSC.mm9.knownGene, shiny
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Sequencing, RNASeq, GeneRegulation, TimeCourse,
NeedsCompilation: no
RoxygenNote: 7.1.1