September 13, 2019

- Added function to call compartments. - Fixed the colour bar so that the ticks are now properly represented. - Added a function to fetch entire matrices

Koustav Pal authored on 13/09/2019 12:31:26
September 2, 2019

Bugfix for viz_art function TAD lines computation

Koustav Pal authored on 02/09/2019 09:50:19

- Bugfix to plotting function. - Fixed the bug wherein two TADs called under two different colour groups were not being considered separately. - Bugfix to LSD - If chrs is NULL, then all chromosomes are processed. In such a scenario, if a chromosome pair is not done, this will cause the entire function to fail. Now, chromosomes which are not done are removed.

Koustav Pal authored on 02/09/2019 08:33:49
August 13, 2019

Bug fixes for BrickContainer functions

Koustav Pal authored on 13/08/2019 18:48:21
August 9, 2019

Made major changes to the Brick workflow. Now bricks are stored as separate files. Functions for parallelization has been added. This is an unstable build.

Koustav Pal authored on 09/08/2019 15:18:42
March 15, 2019

- Major changes to the vignette. Added detailed steps to generate bipartite heatmaps - Fixed a bug in the TAD plotting wherein TADs which coincided with the end of the plotting region were not being considered properly while computing TAD positions.

Koustav Pal authored on 15/03/2019 18:13:44
February 7, 2019

Fixed the plotting of two different TAD definitions on the two sample rotated heatmap

Koustav Pal authored on 07/02/2019 12:53:48
February 5, 2019

Deconvoluted control statements related to checking length and values of colour variables

Koustav Pal authored on 05/02/2019 16:00:59

When computing the coordinates for TAD boundaries, a numeric check is done to check for the number of group values provided. Here a bug was present. The bug was a double not check, which qualified as true. This is now a single not check.

Koustav Pal authored on 05/02/2019 13:46:02
November 6, 2018

Better reporting of logs - Previously, Bioconductor repository guidelines required us to migrate all logs from cat to message. The function cat inserts a space after each independent argument of the message, this is not done by message - Spaces have now been introduced into all logs that are being reported through message.

Koustav Pal authored on 06/11/2018 09:14:55
October 20, 2018

- Changed the package name to HiCBricks - Fixed some minor message formatting

Koustav Pal authored on 20/10/2018 14:54:14
October 19, 2018

- All HiCLegos have been replaced with HiCBlocks. Vignette has been changed.

Koustav Pal authored on 19/10/2018 13:22:46

Package name has been changed. All function names starting with Lego have been renamed to Block. No changes have been made to the codebase

Koustav Pal authored on 19/10/2018 09:46:29
September 26, 2018

substituting cat() with message()

carmencita authored on 26/09/2018 11:27:32
August 30, 2018

correcting BiocCheck

carmencita authored on 30/08/2018 17:14:30