September 2, 2019

Fixed vapply bug in LSD

Koustav Pal authored on 02/09/2019 09:08:53

- Bugfix to plotting function. - Fixed the bug wherein two TADs called under two different colour groups were not being considered separately. - Bugfix to LSD - If chrs is NULL, then all chromosomes are processed. In such a scenario, if a chromosome pair is not done, this will cause the entire function to fail. Now, chromosomes which are not done are removed.

Koustav Pal authored on 02/09/2019 08:33:49
August 23, 2019

bug fixes

Koustav Pal authored on 23/08/2019 22:41:53
August 18, 2019

Removed the usage of the exec parameter

Koustav Pal authored on 18/08/2019 22:28:36
August 14, 2019

Bugfixes and finally all examples have passed and vignette building is complete

Koustav Pal authored on 14/08/2019 15:43:07
August 13, 2019

Bug fixes for BrickContainer functions

Koustav Pal authored on 13/08/2019 18:48:21
August 9, 2019

Made major changes to the Brick workflow. Now bricks are stored as separate files. Functions for parallelization has been added. This is an unstable build.

Koustav Pal authored on 09/08/2019 15:18:42
February 3, 2019

- All required arguments are now without NULL values. - HDF file locking options have been removed.

Koustav Pal authored on 03/02/2019 10:03:30
November 6, 2018

Better reporting of logs - Previously, Bioconductor repository guidelines required us to migrate all logs from cat to message. The function cat inserts a space after each independent argument of the message, this is not done by message - Spaces have now been introduced into all logs that are being reported through message.

Koustav Pal authored on 06/11/2018 09:14:55
October 20, 2018

- Changed the package name to HiCBricks - Fixed some minor message formatting

Koustav Pal authored on 20/10/2018 14:54:14
October 19, 2018

- All HiCLegos have been replaced with HiCBlocks. Vignette has been changed.

Koustav Pal authored on 19/10/2018 13:22:46

Package name has been changed. All function names starting with Lego have been renamed to Block. No changes have been made to the codebase

Koustav Pal authored on 19/10/2018 09:46:29
September 26, 2018

substituting cat() with message()

carmencita authored on 26/09/2018 11:27:32
August 29, 2018

Prepare for final release

Koustav Pal authored on 29/08/2018 11:41:28
August 20, 2018

Fixed LSD chunking bug. Now locating the chunk start and end positions is much simpler. We are using seq. The mcool functions have been added. But they are not yet working

Koustav Pal authored on 20/08/2018 18:42:13