| Name | Mode | Size |
|---|---|---|
| .. | ||
| TP53GenomicFeatures.R | 100755 | 2 kb |
| alignReads.R | 100644 | 9 kb |
| analyzeVariants.R | 100755 | 12 kb |
| bamUtils.R | 100755 | 6 kb |
| buildGenomicFeaturesFromTxDb.R | 100755 | 4 kb |
| checkConfig.R | 100644 | 17 kb |
| config.R | 100644 | 7 kb |
| countGenomicFeatures.R | 100755 | 9 kb |
| coverage.R | 100755 | 9 kb |
| createSummaryCounts.R | 100755 | 2 kb |
| detectAdapterContam.R | 100755 | 7 kb |
| detectRRNA.R | 100755 | 4 kb |
| filterQuality.R | 100755 | 5 kb |
| gatk.R | 100755 | 8 kb |
| initPipeline.R | 100755 | 6 kb |
| io.R | 100644 | 19 kb |
| logging.R | 100755 | 2 kb |
| mergeLanes.R | 100644 | 7 kb |
| picard.R | 100644 | 4 kb |
| preprocessReads.R | 100755 | 11 kb |
| reportPipelineQA.R | 100755 | 26 kb |
| runPipeline.R | 100755 | 4 kb |
| summaries.R | 100644 | 23 kb |
| targetLengths.R | 100755 | 2 kb |
| testHelpers.R | 100644 | 5 kb |
| tools.R | 100644 | 14 kb |
| trimReads.R | 100755 | 2 kb |
| wrapGsnap.R | 100755 | 3 kb |
| zzz.R | 100755 | 0 kb |