1. Gviz
  2. Graph
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  • 82b008e (HEAD -> devel, origin/master, origin/devel, origin/HEAD) Updated to Bioc 3.18 by Robert Ivánek <robert.ivanek@unibas.ch> 2023-04-26 11:08:09 +0200;
  • 0926ac2 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:22:19 -0400;
  • e70aaa7 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:22:19 -0400;
  • 82fb103 Fixed colors in histogram and bumped version by Robert Ivánek <robert.ivanek@unibas.ch> 2023-04-25 12:06:00 +0200;
  • 6048fd1 Bumped version by Robert Ivánek <robert.ivanek@unibas.ch> 2023-04-04 15:14:01 +0200;
  • e36e25c Disabled building the figures from live connections to UCSC and ensembl. Both in vignette and tests. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-04-04 13:28:34 +0200;
  • 9caaa8a Updated workflows to use R 4.3. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-03-27 11:08:36 +0200;
  • 9839dbb (origin/RELEASE_3_16, RELEASE_3_16) Updated branch GA workflows. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-03-15 11:31:07 +0100;
  • c60b082 Updated branch names, GA workflows. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-03-15 11:30:36 +0100;
  • d5a426a Updated GA workflows fro 3_16 by Robert Ivánek <robert.ivanek@unibas.ch> 2023-03-13 14:07:45 +0100;
  • 1f4e1e8 Updated GA Worflow. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-03-13 11:46:32 +0100;
  • f14c4c0 Update GA worklows. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-03-13 10:42:31 +0100;
  • 1dac421 Update links in README, and GA workflow. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-03-10 17:18:29 +0100;
  • 3364b6a Propageted fixes from master, version bump in RELEASE_3_16. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-02-17 19:47:48 +0100;
  • 8d45ff4 Updated to recent version. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-02-17 19:36:16 +0100;
  • a2d5d1e Fixed documentation. Version bumped. by Robert Ivánek <robert.ivanek@unibas.ch> 2023-02-17 19:33:21 +0100;
  • db7ebed Fix the issue of parsed data from rtracklayer for UcscTrack, addressing <a href="#71">#71</a> by Robert Ivánek <robert.ivanek@unibas.ch> 2023-02-17 16:44:37 +0100;
  • 110c7d0 fix issue with wrongly label groups in DataTrack <a href="#74">#74</a> by Robert Ivánek <robert.ivanek@unibas.ch> 2023-02-17 15:31:09 +0100;
  • aefa8d1 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:41 -0400;
  • 4eddb68 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:06:41 -0400;
  • bd1411c roxygen update. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-10-21 15:56:32 +0200;
  • d218437 (origin/RELEASE_3_15, RELEASE_3_15) Bumped version. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-05-03 19:45:39 +0200;
  • 46c2a92 Bumped version. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-05-03 19:45:09 +0200;
  • 45f5178 Fixing error with Overlaytrack when sizes are provided <a href="#65">#65</a> , in release. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-05-03 19:42:26 +0200;
  • e4110c9 Fix error when sizes are provided and there is OverlayTrack, closing <a href="#65">#65</a> . by Robert Ivánek <robert.ivanek@unibas.ch> 2022-05-03 19:05:12 +0200;
  • 7433721 updated GA after release by Robert Ivánek <robert.ivanek@unibas.ch> 2022-05-03 11:40:07 +0200;
  • c849a68 updated README and GA after release by Robert Ivánek <robert.ivanek@unibas.ch> 2022-05-03 11:36:59 +0200;
  • 623e7cd bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:10:17 +0000;
  • 41cafde bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:10:17 +0000;
  • cac97ae Bumped version. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-04-07 15:41:14 +0200;
  • 88f7778 Update of R version. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-04-07 14:47:45 +0200;
  • c2cd373 Updated GA to use `rc` candicate of R by Robert Ivánek <robert.ivanek@unibas.ch> 2022-04-07 14:41:55 +0200;
  • e44157b Fix for #62. Recursive use of Overlaytracks and wrong panel. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-04-07 14:36:00 +0200;
  • 459fda8 Removed unnecesary line of code for <a href="#46">#46</a> fix. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-04-07 14:34:36 +0200;
  • 6cde2b9 (origin/RELEASE_3_14, RELEASE_3_14) Fixed issue with ylims. Closing #46. Bumped version. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-04-07 11:04:42 +0200;
  • 03dc141 Fix ylims issue. Closing #46. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-04-07 10:23:13 +0200;
  • 2c1a852 Changed package citation to CFF. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-24 11:02:53 +0100;
  • 5d634e4 Added citation for the repo. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-24 10:33:47 +0100;
  • 812e4d0 Restructured the code, split according to the class, first version of roxygen2 documentation. Bumped the version. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-21 16:52:54 +0100;
  • c4b352a use new cache in GitHub Actions by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-21 16:31:49 +0100;
  • 1a67951 Version bump in 3.14. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-21 16:19:56 +0100;
  • 0d1b9da Fix displaying overlapping features. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-21 16:19:29 +0100;
  • 0a6644a Bumped version. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-18 10:06:46 +0100;
  • 6cbefbc Added useEnsembl to imported functions. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-18 09:57:54 +0100;
  • e914573 Code cleanup, switch to useEnsembl instread of useMart by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-18 09:48:43 +0100;
  • a18889e Code cleanup. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-18 09:47:13 +0100;
  • 5ba2e9d Added missing possibility to run different aggreation fucntions over user defined windows in DataTrack [bug]. Some code cleanup in methods. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-18 09:30:58 +0100;
  • 2f6ae8b Version bump. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-10 10:19:16 +0100;
  • ec0a917 Code cleanup. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-10 10:18:58 +0100;
  • 61cdd88 Added possibility to use different aggregation functions for running windows (DataTrack) by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-07 18:43:20 +0100;
  • cc75d47 Code cleanup. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-06 20:52:50 +0100;
  • 78bbfbc Remove AlignedReadTrack functions. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-06 16:39:34 +0100;
  • a6b04ea Switched to useEnsembl istead of useMart by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-06 16:09:36 +0100;
  • 43f3ff1 Reverted back the scale bar annotation (no bp for small numbers) by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-05 22:27:37 +0100;
  • 02662c4 Bumped veresion, increased R version in deps. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-05 21:56:33 +0100;
  • 910610d Fixed issue with shifted read ends and deletions. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-05 21:55:28 +0100;
  • a878a9a Reverting the specification of R version back. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-05 11:23:28 +0100;
  • b0eca0f test different specification of R version for GA by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-05 11:21:03 +0100;
  • 843115f Version bump. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-05 09:18:12 +0100;
  • 638661d Fix issue with shifted end of reads and shifted start of deletions in AlignmentsTrack. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-05 09:17:40 +0100;
  • b6a5eb2 Updated rda files. by Robert Ivánek <robert.ivanek@unibas.ch> 2022-01-04 14:23:33 +0100;
  • ae512b1 Merge remote-tracking branch 'upstream/master' by Robert Ivánek <robert.ivanek@unibas.ch> 2021-11-05 10:24:01 +0100;
  • 4f3f408 Pass serialized datasets thru updateObject() by Hervé Pagès <hpages.on.github@gmail.com> 2021-11-02 12:16:34 -0700;
  • 454ffd6 updated workflows by Robert Ivánek <robert.ivanek@unibas.ch> 2021-10-29 17:08:28 +0200;
  • 5fe61a8 updated workflows by Robert Ivánek <robert.ivanek@unibas.ch> 2021-10-29 17:04:30 +0200;
  • c6947c9 updated workflows by Robert Ivánek <robert.ivanek@unibas.ch> 2021-10-29 16:58:42 +0200;
  • bd1bc59 updated README by Robert Ivánek <robert.ivanek@unibas.ch> 2021-10-29 16:50:36 +0200;
  • b9518f5 added "bp" to GenomeAxisTrack for values below 1000 by Robert Ivánek <robert.ivanek@unibas.ch> 2021-10-29 16:50:17 +0200;
  • e789325 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:02:00 +0000;
  • 2091331 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-10-26 16:02:00 +0000;
  • 0fb99e0 Version bump. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-07-02 11:39:03 +0200;
  • 742ed80 (origin/RELEASE_3_13, RELEASE_3_13) Version bump. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-07-02 11:34:16 +0200;
  • 4c06b4c Fixing <a href="#49">#49</a> in RELEASE_3_13. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-07-02 11:28:41 +0200;
  • fb3486b Fixing <a href="#49">#49</a> in master. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-07-02 11:27:05 +0200;
  • 8745800 Bumped version by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-29 23:11:37 +0200;
  • f532165 Bumbed version. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-29 23:10:13 +0200;
  • 2576018 Updated README. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-27 16:22:53 +0200;
  • 877d2e7 Updated README. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-27 16:21:46 +0200;
  • c8b6901 added xml2 to suggests, as proposed in <a href="#47">#47</a> by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-27 15:19:07 +0200;
  • 9804d94 Added dependecy on xml2, as suggested in <a href="#47">#47</a> by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-27 15:17:48 +0200;
  • 6fea35d Updated GA for the new release branch (3.13) by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-27 14:50:20 +0200;
  • a1cd04a Updated github GA. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-05-27 14:47:16 +0200;
  • ce01f0f bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:51:26 +0000;
  • bf4ed1c bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2021-05-19 15:51:26 +0000;
  • 6a86bbf bumped version. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-04-19 22:26:06 +0200;
  • 5d03608 Fixed subseting for ReferenceSequenceTrack by Robert Ivánek <robert.ivanek@unibas.ch> 2021-04-19 21:45:20 +0200;
  • e29c4ea Trigger Build by Robert Ivánek <robert.ivanek@unibas.ch> 2021-03-24 21:56:10 +0100;
  • 5aa425a (origin/RELEASE_3_12, RELEASE_3_12) Fixing bugs in relesease, in boxplot-like plot and #42, bumping version by Robert Ivánek <robert.ivanek@unibas.ch> 2021-03-14 23:05:41 +0100;
  • e3a1fcd Version bump in devel. by Robert Ivánek <robert.ivanek@unibas.ch> 2021-03-14 22:57:46 +0100;
  • 5667a6f Fixing #42, need to recalculate index for matching runValue by Robert Ivánek <robert.ivanek@unibas.ch> 2021-03-14 22:52:31 +0100;
  • bc846b6 updated GHA by Robert Ivánek <robert.ivanek@unibas.ch> 2021-01-11 12:07:26 +0100;
  • d15ad47 added Mike Smith to co-author list by Robert Ivánek <robert.ivanek@unibas.ch> 2021-01-11 11:34:32 +0100;
  • 6c52b43 Merge branch 'grimbough-master' Merge <a href="#40">#40</a> fix for recent changes in rtracklayer, in ucscTableQuery() by Robert Ivánek <robert.ivanek@unibas.ch> 2021-01-11 11:31:12 +0100;
  • 5fec8dd Version bump by Mike Smith <grimbough@gmail.com> 2021-01-07 23:14:30 +0100;
  • 267b73e Be specific about the uscsTableQuery() arguments by Mike Smith <grimbough@gmail.com> 2021-01-07 23:13:27 +0100;
  • ed4615d added RCurl to dependencies for GHA by Robert Ivánek <robert.ivanek@unibas.ch> 2020-12-02 09:37:53 +0100;
  • 52258d4 Bumped version by Robert Ivánek <robert.ivanek@unibas.ch> 2020-11-30 10:58:13 +0100;
  • ed179e2 Removed empty itemize. by Robert Ivánek <robert.ivanek@unibas.ch> 2020-11-30 10:57:49 +0100;
  • c5aa4ed version bump by Robert Ivánek <robert.ivanek@unibas.ch> 2020-11-23 11:29:16 +0100;
  • bfe10e3 Clean-up after defunct by Robert Ivánek <robert.ivanek@unibas.ch> 2020-11-23 11:25:39 +0100;