1. Gviz
  2. README.md
Browse code

Updated to Bioc 3.18

Robert Ivánek authored on 26/04/2023 09:08:09
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README.md
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 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
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-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_16)](https://github.com/ivanek/Gviz/tree/RELEASE_3_16) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/devel)](https://github.com/ivanek/Gviz/tree/devel/) |
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-| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_16)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=devel)](https://github.com/ivanek/Gviz/actions) |
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-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_16)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_16) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=devel)](https://codecov.io/github/ivanek/Gviz) |
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+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_17)](https://github.com/ivanek/Gviz/tree/RELEASE_3_17) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/devel)](https://github.com/ivanek/Gviz/tree/devel/) |
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+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_17)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=devel)](https://github.com/ivanek/Gviz/actions) |
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+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_17)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_17) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=devel)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
29 29
Browse code

Updated branch names, GA workflows.

Robert Ivánek authored on 15/03/2023 10:30:36
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README.md
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 | OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
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-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_16)](https://github.com/ivanek/Gviz/tree/RELEASE_3_16) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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-| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_16)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_16)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_16) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_16)](https://github.com/ivanek/Gviz/tree/RELEASE_3_16) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/devel)](https://github.com/ivanek/Gviz/tree/devel/) |
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+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_16)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=devel)](https://github.com/ivanek/Gviz/actions) |
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+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_16)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_16) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=devel)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
29 29
Browse code

Update links in README, and GA workflow.

Robert Ivánek authored on 10/03/2023 16:18:29
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README.md
History View file @ 1dac421
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@@ -21,9 +21,9 @@ Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](h
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 | OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
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-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_15)](https://github.com/ivanek/Gviz/tree/RELEASE_3_15) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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-| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_15)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_15)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_15) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_16)](https://github.com/ivanek/Gviz/tree/RELEASE_3_16) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_16)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_16)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_16) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
29 29
Browse code

updated README and GA after release

Robert Ivánek authored on 03/05/2022 09:36:59
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README.md
History View file @ c849a68
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@@ -21,9 +21,9 @@ Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](h
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 | OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
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-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_14)](https://github.com/ivanek/Gviz/tree/RELEASE_3_14) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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-| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_14)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_14)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_14) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_15)](https://github.com/ivanek/Gviz/tree/RELEASE_3_15) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_15)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_15)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_15) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
29 29
Browse code

updated README

Robert Ivánek authored on 29/10/2021 14:50:36
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README.md
History View file @ bd1bc59
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@@ -21,9 +21,9 @@ Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](h
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 | OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
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-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_13)](https://github.com/ivanek/Gviz/tree/RELEASE_3_13) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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-| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_13)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_13)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_13) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_14)](https://github.com/ivanek/Gviz/tree/RELEASE_3_14) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_14)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_14)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_14) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
29 29
Browse code

Updated README.

Robert Ivánek authored on 27/05/2021 14:22:53
Showing 1 changed files
README.md
History View file @ 2576018
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@@ -21,9 +21,9 @@ Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](h
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 | OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
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 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
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-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_12)](https://github.com/ivanek/Gviz/tree/RELEASE_3_12) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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-| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_12)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_12)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_12) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_13)](https://github.com/ivanek/Gviz/tree/RELEASE_3_13) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
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+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_13)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
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+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_13)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_13) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
29 29
Browse code

added issue badge in README

Robert Ivánek authored on 04/11/2020 11:55:40
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README.md
History View file @ f630194
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@@ -9,7 +9,9 @@
9 9 
 [![How long since the package was first in a released Bioconductor version](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](https://bioconductor.org/packages/Gviz)
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 [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/)
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 [![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
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-[![License: Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](https://opensource.org/licenses/Artistic-2.0)
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+[![License:
13 
+Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](https://opensource.org/licenses/Artistic-2.0)
14 
+[![GitHub issues](https://img.shields.io/github/issues/ivanek/Gviz)](https://github.com/ivanek/Gviz/issues)
13 15 
 <!-- badges: end -->
14 16
15 17 
 &nbsp;
Browse code

Removed Travis

Robert Ivánek authored on 04/11/2020 10:11:01
Showing 1 changed files
README.md
History View file @ 339c973
... ... 
@@ -20,7 +20,6 @@
20 20 
 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
21 21 
 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
22 22 
 | GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_12)](https://github.com/ivanek/Gviz/tree/RELEASE_3_12) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
23 
-| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.com/ivanek/Gviz.svg?branch=RELEASE_3_12)](https://travis-ci.com/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.com/ivanek/Gviz.svg?branch=master)](https://travis-ci.com/ivanek/Gviz) |
24 23 
 | GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_12)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
25 24 
 | Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_12)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_12) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
26 25
Browse code

updated links in README

Robert Ivánek authored on 04/11/2020 08:44:26
Showing 1 changed files
README.md
History View file @ 8cd44c8
... ... 
@@ -20,7 +20,7 @@
20 20 
 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
21 21 
 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
22 22 
 | GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_12)](https://github.com/ivanek/Gviz/tree/RELEASE_3_12) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
23 
-| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_12)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
23 
+| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.com/ivanek/Gviz.svg?branch=RELEASE_3_12)](https://travis-ci.com/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.com/ivanek/Gviz.svg?branch=master)](https://travis-ci.com/ivanek/Gviz) |
24 24 
 | GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_12)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
25 25 
 | Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_12)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_12) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
26 26
Browse code

adjusted README to reflect new release

Robert Ivánek authored on 29/10/2020 14:15:55
Showing 1 changed files
README.md
History View file @ f13266b
... ... 
@@ -19,10 +19,10 @@
19 19 
 | OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
20 20 
 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
21 21 
 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
22 
-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_11)](https://github.com/ivanek/Gviz/tree/RELEASE_3_11) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
23 
-| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_11)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
24 
-| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_11)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
25 
-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_11)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_11) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
22 
+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_12)](https://github.com/ivanek/Gviz/tree/RELEASE_3_12) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
23 
+| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_12)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
24 
+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_12)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
25 
+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_12)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_12) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
26 26
27 27 
 ## Authors
28 28
Browse code

Fixed links to GA pages (bagdes).

Robert Ivánek authored on 21/05/2020 22:00:28
Showing 1 changed files
README.md
History View file @ 7a50b27
... ... 
@@ -10,7 +10,6 @@
10 10 
 [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/)
11 11 
 [![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
12 12 
 [![License: Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](https://opensource.org/licenses/Artistic-2.0)
13 
-[![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check/badge.svg)](https://github.com/ivanek/Gviz/actions)
14 13 
 <!-- badges: end -->
15 14
16 15 
 &nbsp;
... ... 
@@ -22,6 +21,7 @@
22 21 
 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
23 22 
 | GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_11)](https://github.com/ivanek/Gviz/tree/RELEASE_3_11) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
24 23 
 | Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_11)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
24 
+| GitHub Actions      | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=RELEASE_3_11)](https://github.com/ivanek/Gviz/actions) | [![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check-bioc/badge.svg?branch=master)](https://github.com/ivanek/Gviz/actions) |
25 25 
 | Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_11)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_11) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
26 26
27 27 
 ## Authors
... ... 
@@ -72,7 +72,7 @@ For detailed instructions check the package vignette
72 72 
 ([release](https://bioconductor.org/packages/release/bioc/vignettes/Gviz/inst/doc/Gviz.html)
73 73 
 or
74 74 
 [developmental](https://bioconductor.org/packages/devel/bioc/vignettes/Gviz/inst/doc/Gviz.html)
75 
-version).
75 
+version). Or check the [GitHub.io page](https://ivanek.github.io/Gviz/).
76 76
77 77 
 ## Citation
78 78
Browse code

Replaced TRAVIS CI with github actions (biocthis)

Robert Ivánek authored on 20/05/2020 19:53:25
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README.md
History View file @ 5f1d0c9
... ... 
@@ -10,6 +10,7 @@
10 10 
 [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/)
11 11 
 [![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
12 12 
 [![License: Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](https://opensource.org/licenses/Artistic-2.0)
13 
+[![R build status](https://github.com/ivanek/Gviz/workflows/R-CMD-check/badge.svg)](https://github.com/ivanek/Gviz/actions)
13 14 
 <!-- badges: end -->
14 15
15 16 
 &nbsp;
Browse code

[skip travis] updated link to coverage (RELEASE_3_11 branch) in README.md

Robert Ivánek authored on 27/04/2020 21:00:24
Showing 1 changed files
README.md
History View file @ 668200a
... ... 
@@ -21,7 +21,7 @@
21 21 
 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
22 22 
 | GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_11)](https://github.com/ivanek/Gviz/tree/RELEASE_3_11) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
23 23 
 | Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_11)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
24 
-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_11)](https://codecov.io/github/ivanek/Gviz) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
24 
+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_11)](https://codecov.io/gh/ivanek/Gviz/branch/RELEASE_3_11) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
25 25
26 26 
 ## Authors
27 27
Browse code

[skip travis] updated README.md

Robert Ivánek authored on 27/04/2020 20:43:01
Showing 1 changed files
README.md
History View file @ db2ca38
... ... 
@@ -19,9 +19,9 @@
19 19 
 | OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
20 20 
 | Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
21 21 
 | Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
22 
-| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_10)](https://github.com/ivanek/Gviz/tree/RELEASE_3_10) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
23 
-| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_10)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
24 
-| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_10)](https://codecov.io/github/ivanek/Gviz) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
22 
+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_11)](https://github.com/ivanek/Gviz/tree/RELEASE_3_11) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
23 
+| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_11)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
24 
+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_11)](https://codecov.io/github/ivanek/Gviz) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
25 25
26 26 
 ## Authors
27 27
Browse code

[skip travis] README added licence

Robert Ivánek authored on 21/02/2020 11:46:53
Showing 1 changed files
README.md
History View file @ d45284c
... ... 
@@ -9,6 +9,7 @@
9 9 
 [![How long since the package was first in a released Bioconductor version](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](https://bioconductor.org/packages/Gviz)
10 10 
 [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/)
11 11 
 [![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
12 
+[![License: Artistic-2.0](https://img.shields.io/badge/License-Artistic%202.0-0298c3.svg)](https://opensource.org/licenses/Artistic-2.0)
12 13 
 <!-- badges: end -->
13 14
14 15 
 &nbsp;
... ... 
@@ -41,7 +42,7 @@ Genomic data analyses requires integrated visualization of known genomic informa
41 42
42 43 
 ## Installation
43 44
44 
-### Release version
45 
+#### Release version
45 46
46 47 
 ```
47 48 
 if (!requireNamespace("BiocManager", quietly = TRUE))
... ... 
@@ -49,7 +50,7 @@ if (!requireNamespace("BiocManager", quietly = TRUE))
49 50 
 BiocManager::install("Gviz", version = "release")
50 51 
 ```
51 52
52 
-### Developmental version
53 
+#### Developmental version
53 54
54 55 
 ```
55 56 
 if (!requireNamespace("BiocManager", quietly = TRUE))
... ... 
@@ -57,7 +58,7 @@ if (!requireNamespace("BiocManager", quietly = TRUE))
57 58 
 BiocManager::install("Gviz", version = "devel")
58 59 
 ```
59 60
60 
-### Github
61 
+#### Github
61 62
62 63 
 ```
63 64 
 if (!requireNamespace("remotes", quietly = TRUE))
Browse code

[skip travis] README.md added links to vignettes

Robert Ivánek authored on 21/02/2020 11:20:37
Showing 1 changed files
README.md
History View file @ 549668d
... ... 
@@ -7,16 +7,20 @@
7 7 
 <!-- badges: start -->
8 8 
 [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
9 9 
 [![How long since the package was first in a released Bioconductor version](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](https://bioconductor.org/packages/Gviz)
10 
-[![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/)
11 10 
 [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/)
12 11 
 [![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
13 12 
 <!-- badges: end -->
14 13
15 
-| Platform | Last Update | Status | Last Commit | Travis CI | Coverage |
16 
-|:---------|:-----------:|:------:|:-----------:|:---------:|:--------:|
17 
-| Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | ![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz)
18 
-| Bioc ([release](https://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | ![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_10) | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_10)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_10)](https://codecov.io/github/ivanek/Gviz)
14 
+&nbsp;
19 15
16 
+|                     | Bioc ([release](https://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html)) |
17 
+|:--------------------|----------------------------------------------------------------------------:|--------------------------------------------------------------------------------:|
18 
+| OS                  | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
19 
+| Bioc Last Update    | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) |
20 
+| Bioc Status         | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) |
21 
+| GitHub Last Commit  | [![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_10)](https://github.com/ivanek/Gviz/tree/RELEASE_3_10) | [![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master)](https://github.com/ivanek/Gviz/tree/master/) |
22 
+| Travis CI           | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_10)](https://travis-ci.org/ivanek/Gviz/branches) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) |
23 
+| Coverage            | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_10)](https://codecov.io/github/ivanek/Gviz) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
20 24
21 25 
 ## Authors
22 26
... ... 
@@ -56,11 +60,17 @@ BiocManager::install("Gviz", version = "devel")
56 60 
 ### Github
57 61
58 62 
 ```
59 
-if (!requireNamespace("devtools", quietly = TRUE))
60 
-    install.packages("devtools")
61 
-devtools::install_github("ivanek/Gviz")
63 
+if (!requireNamespace("remotes", quietly = TRUE))
64 
+    install.packages("remotes")
65 
+remotes::install_github("ivanek/Gviz")
62 66 
 ```
67 
+## Usage
63 68
69 
+For detailed instructions check the package vignette
70 
+([release](https://bioconductor.org/packages/release/bioc/vignettes/Gviz/inst/doc/Gviz.html)
71 
+or
72 
+[developmental](https://bioconductor.org/packages/devel/bioc/vignettes/Gviz/inst/doc/Gviz.html)
73 
+version).
64 74
65 75 
 ## Citation
66 76
Browse code

[skip travis] updated README

Robert Ivánek authored on 20/02/2020 22:32:18
Showing 1 changed files
README.md
History View file @ ef869dc
... ... 
@@ -7,20 +7,16 @@
7 7 
 <!-- badges: start -->
8 8 
 [![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
9 9 
 [![How long since the package was first in a released Bioconductor version](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](https://bioconductor.org/packages/Gviz)
10 
+[![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/)
11 
+[![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/)
10 12 
 [![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
11 13 
 <!-- badges: end -->
12 14
13 
-| Platform  |      OS   |    Last Update |      Status      |      Coverage    | Downloads |
14 
-|:----------|:---------:|:--------------:|:----------------:|:----------------:|:---------:|
15 
-| Travis CI |   Linux   | [![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz)](https://github.com/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
16 
-| Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html))     | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | NA | [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
17 
-| Bioc ([release](https://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | NA | [![Bioconductor-release Downloads](https://bioconductor.org/shields/downloads/release/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
15 
+| Platform | Last Update | Status | Last Commit | Travis CI | Coverage |
16 
+|:---------|:-----------:|:------:|:-----------:|:---------:|:--------:|
17 
+| Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | ![GitHub last commit (Bioconductor-devel)](https://img.shields.io/github/last-commit/ivanek/Gviz/master) | [![Build Status (Bioconductor-devel)](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io (Bioconductor-devel)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz)
18 
+| Bioc ([release](https://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | ![GitHub last commit (Bioconductor-release)](https://img.shields.io/github/last-commit/ivanek/Gviz/RELEASE_3_10) | [![Build Status  (Bioconductor-release)](https://travis-ci.org/ivanek/Gviz.svg?branch=RELEASE_3_10)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io (Bioconductor-release)](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=RELEASE_3_10)](https://codecov.io/github/ivanek/Gviz)
18 19
19 
-<!--
20 
-| Travis CI |   Linux   | [![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz)](https://github.com/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
21 
-
22 
-| Travis CI |   Linux   | [![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz)](https://github.com/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://img.shields.io/codecov/c/github/ivanek/Gviz/master)](https://codecov.io/github/ivanek/Gviz) | NA |
23 20
24 21 
 ## Authors
25 22
Browse code

Fix links in rREADME

Robert Ivánek authored on 19/02/2020 09:22:21
Showing 1 changed files
README.md
History View file @ 1e8a327
... ... 
@@ -13,7 +13,7 @@
13 13 
 | Platform  |      OS   |    Last Update |      Status      |      Coverage    | Downloads |
14 14 
 |:----------|:---------:|:--------------:|:----------------:|:----------------:|:---------:|
15 15 
 | Travis CI |   Linux   | [![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz)](https://github.com/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
16 
-| Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html))     | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | NA | [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
16 
+| Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html))     | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | NA | [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
17 17 
 | Bioc ([release](https://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | NA | [![Bioconductor-release Downloads](https://bioconductor.org/shields/downloads/release/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
18 18
19 19 
 <!--
Browse code

[skip travis] added badge for active repo

Robert Ivánek authored on 17/02/2020 17:33:02
Showing 1 changed files
README.md
History View file @ e7ec41d
... ... 
@@ -4,18 +4,23 @@
4 4
5 5 
 ## Software status
6 6
7 
-
7 
+<!-- badges: start -->
8 
+[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
8 9 
 [![How long since the package was first in a released Bioconductor version](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](https://bioconductor.org/packages/Gviz)
9 10 
 [![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
10 
-
11 
+<!-- badges: end -->
11 12
12 13 
 | Platform  |      OS   |    Last Update |      Status      |      Coverage    | Downloads |
13 14 
 |:----------|:---------:|:--------------:|:----------------:|:----------------:|:---------:|
14 
-| Travis CI |   Linux   | ![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
15 
+| Travis CI |   Linux   | [![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz)](https://github.com/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
15 16 
 | Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html))     | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | NA | [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
16 17 
 | Bioc ([release](https://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | NA | [![Bioconductor-release Downloads](https://bioconductor.org/shields/downloads/release/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
17 18
19 
+<!--
20 
+| Travis CI |   Linux   | [![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz)](https://github.com/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
18 21
22 
+| Travis CI |   Linux   | [![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz)](https://github.com/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://img.shields.io/codecov/c/github/ivanek/Gviz/master)](https://codecov.io/github/ivanek/Gviz) | NA |
23 
+-->
19 24
20 25 
 ## Authors
21 26
Browse code

[skip travis] Updaded links in README.

Robert Ivánek authored on 17/02/2020 17:20:44
Showing 1 changed files
README.md
History View file @ a64ef8f
... ... 
@@ -12,8 +12,8 @@
12 12 
 | Platform  |      OS   |    Last Update |      Status      |      Coverage    | Downloads |
13 13 
 |:----------|:---------:|:--------------:|:----------------:|:----------------:|:---------:|
14 14 
 | Travis CI |   Linux   | ![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
15 
-| Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html))     | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/packages/Gviz#archives) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | NA | [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](http://bioconductor.org/packages/stats/bioc/Gviz/) |
16 
-| Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/packages/Gviz#archives) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | NA | [![Bioconductor-release Downloads](https://bioconductor.org/shields/downloads/release/Gviz.svg)](http://bioconductor.org/packages/stats/bioc/Gviz/) |
15 
+| Bioc ([devel](https://bioconductor.org/packages/devel/bioc/html/Gviz.html))     | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | NA | [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
16 
+| Bioc ([release](https://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | NA | [![Bioconductor-release Downloads](https://bioconductor.org/shields/downloads/release/Gviz.svg)](https://bioconductor.org/packages/stats/bioc/Gviz/) |
17 17
18 18
19 19
... ... 
@@ -32,7 +32,7 @@
32 32
33 33 
 ![Gviz UCSC like screenshot](vignettes/Gviz-example.png)
34 34
35 
-Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the [biomaRt](http://bioconductor.org/packages/biomaRt/) and the [rtracklayer](http://bioconductor.org/packages/rtracklayer/) packages to perform live annotation queries to [Ensembl](https://www.ensembl.org/) and [UCSC](https://genome.ucsc.edu) and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
35 
+Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the [biomaRt](https://bioconductor.org/packages/biomaRt/) and the [rtracklayer](https://bioconductor.org/packages/rtracklayer/) packages to perform live annotation queries to [Ensembl](https://www.ensembl.org/) and [UCSC](https://genome.ucsc.edu) and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
36 36
37 37 
 ## Installation
38 38
... ... 
@@ -63,4 +63,4 @@ devtools::install_github("ivanek/Gviz")
63 63
64 64 
 ## Citation
65 65
66 
-- Hahne F, Ivanek R (2016). "Statistical Genomics: Methods and Protocols." In Mathé E, Davis S (eds.), chapter Visualizing Genomic Data Using Gviz and Bioconductor, 335–351. Springer New York, New York, NY. ISBN 978-1-4939-3578-9, doi: [10.1007/978-1-4939-3578-9_16](http://dx.doi.org/10.1007/978-1-4939-3578-9_16).
66 
+- Hahne F, Ivanek R (2016). "Statistical Genomics: Methods and Protocols." In Mathé E, Davis S (eds.), chapter Visualizing Genomic Data Using Gviz and Bioconductor, 335–351. Springer New York, New York, NY. ISBN 978-1-4939-3578-9, doi: [10.1007/978-1-4939-3578-9_16](https://dx.doi.org/10.1007/978-1-4939-3578-9_16).
Browse code

Edited readme

Robert Ivánek authored on 17/02/2020 16:46:21
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 ## Software status
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-| In BioC | Travis CI | Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Coverage |
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-|:--------|:---------:|:--------------:|:----------------:|:--------:|
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-| [![In Bioc](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](http://bioconductor.org/packages/Gviz) | [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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+
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+[![How long since the package was first in a released Bioconductor version](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](https://bioconductor.org/packages/Gviz)
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+[![Support site activity in last 6 months: agged questions/avg. answers per question/avg. comments per question/accepted answers, or 0 if no tagged posts](https://bioconductor.org/shields/posts/Gviz.svg)](https://support.bioconductor.org/t/gviz/)
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+
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+
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+| Platform  |      OS   |    Last Update |      Status      |      Coverage    | Downloads |
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+|:----------|:---------:|:--------------:|:----------------:|:----------------:|:---------:|
14 
+| Travis CI |   Linux   | ![GitHub last commit](https://img.shields.io/github/last-commit/ivanek/Gviz) | [![Travis CI](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) | NA |
15 
+| Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html))     | [![Platforms](https://bioconductor.org/shields/availability/devel/Gviz.svg)](https://bioconductor.org/packages/Gviz#archives) | [![Bioconductor-devel Last Commit](https://bioconductor.org/shields/lastcommit/devel/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | NA | [![Bioconductor-devel Downloads](https://bioconductor.org/shields/downloads/devel/Gviz.svg)](http://bioconductor.org/packages/stats/bioc/Gviz/) |
16 
+| Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | [![Platforms](https://bioconductor.org/shields/availability/release/Gviz.svg)](https://bioconductor.org/packages/Gviz#archives) | [![Bioconductor-release Last Commit](https://bioconductor.org/shields/lastcommit/release/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz/) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | NA | [![Bioconductor-release Downloads](https://bioconductor.org/shields/downloads/release/Gviz.svg)](http://bioconductor.org/packages/stats/bioc/Gviz/) |
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+
18 
+
10 19
11 20 
 ## Authors
12 21
Browse code

REDME.md, fixed link to devel status page in Bioc

Robert Ivánek authored on 04/01/2019 20:38:46
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6 6
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 | In BioC | Travis CI | Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Coverage |
8 8 
 |:--------|:---------:|:--------------:|:----------------:|:--------:|
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-| [![In Bioc](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](http://bioconductor.org/packages/Gviz) | [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
9 
+| [![In Bioc](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](http://bioconductor.org/packages/Gviz) | [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
12 12
Browse code

fixed link in README.md

Robert Ivánek authored on 11/12/2018 11:15:59
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@@ -6,7 +6,7 @@
6 6
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 | In BioC | Travis CI | Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Coverage |
8 8 
 |:--------|:---------:|:--------------:|:----------------:|:--------:|
9 
-| ![In Bioc](https://bioconductor.org/shields/years-in-bioc/Gviz.svg) | [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
9 
+| [![In Bioc](https://bioconductor.org/shields/years-in-bioc/Gviz.svg)](http://bioconductor.org/packages/Gviz) | [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
10 10
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 ## Authors
12 12
Browse code

added example figure into README.md

Robert Ivánek authored on 11/12/2018 10:55:24
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@@ -4,9 +4,9 @@
4 4
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 ## Software status
6 6
7 
-| Travis CI | Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Coverage |
8 
-|:---------:|:--------------:|:----------------:|:--------:|
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-| [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](http://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](http://bioconductor.org/shields/build/release/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
7 
+| In BioC | Travis CI | Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Coverage |
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+|:--------|:---------:|:--------------:|:----------------:|:--------:|
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+| ![In Bioc](https://bioconductor.org/shields/years-in-bioc/Gviz.svg) | [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](https://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](https://bioconductor.org/shields/build/release/bioc/Gviz.svg)](https://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
12 12
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@@ -21,8 +21,37 @@
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 ## Overview
23 23
24 
+![Gviz UCSC like screenshot](vignettes/Gviz-example.png)
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+
24 26 
 Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the [biomaRt](http://bioconductor.org/packages/biomaRt/) and the [rtracklayer](http://bioconductor.org/packages/rtracklayer/) packages to perform live annotation queries to [Ensembl](https://www.ensembl.org/) and [UCSC](https://genome.ucsc.edu) and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
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+## Installation
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+
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+### Release version
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+
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+```
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+if (!requireNamespace("BiocManager", quietly = TRUE))
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+    install.packages("BiocManager")
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+BiocManager::install("Gviz", version = "release")
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+```
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+
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+### Developmental version
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+
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+```
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+if (!requireNamespace("BiocManager", quietly = TRUE))
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+    install.packages("BiocManager")
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+BiocManager::install("Gviz", version = "devel")
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+```
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+
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+### Github
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+
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+```
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+if (!requireNamespace("devtools", quietly = TRUE))
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+    install.packages("devtools")
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+devtools::install_github("ivanek/Gviz")
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+```
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+
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+
26 55 
 ## Citation
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28 57 
 - Hahne F, Ivanek R (2016). "Statistical Genomics: Methods and Protocols." In Mathé E, Davis S (eds.), chapter Visualizing Genomic Data Using Gviz and Bioconductor, 335–351. Springer New York, New York, NY. ISBN 978-1-4939-3578-9, doi: [10.1007/978-1-4939-3578-9_16](http://dx.doi.org/10.1007/978-1-4939-3578-9_16).
Browse code

README.md added link to code coverage

Robert Ivánek authored on 10/12/2018 15:57:22
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 | Travis CI | Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Coverage |
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 |:---------:|:--------------:|:----------------:|:--------:|
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-| [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](http://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](http://bioconductor.org/shields/build/release/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) |          |
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+| [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](http://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](http://bioconductor.org/shields/build/release/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Codecov.io coverage status](https://codecov.io/github/ivanek/Gviz/coverage.svg?branch=master)](https://codecov.io/github/ivanek/Gviz) |
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 ## Authors
12 12
Browse code

renamed logo files

Robert Ivánek authored on 10/12/2018 11:01:18
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-<img src="vignettes/Gviz.png" align="right" alt="" width="120" />
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+<img src="vignettes/Gviz-logo.png" align="right" alt="" width="120" />
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 # _Gviz_ - Plotting data and annotation information along genomic coordinates
4 4
Browse code

added links for packages and genome browsers into README.md

Robert Ivánek authored on 10/12/2018 10:37:13
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 ## Overview
23 23
24 
-Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the `biomaRt` and the `rtracklayer` packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
24 
+Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the [biomaRt](http://bioconductor.org/packages/biomaRt/) and the [rtracklayer](http://bioconductor.org/packages/rtracklayer/) packages to perform live annotation queries to [Ensembl](https://www.ensembl.org/) and [UCSC](https://genome.ucsc.edu) and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
25 25
26 26 
 ## Citation
27 27
Browse code

added files for Github Travis CI build

Robert Ivánek authored on 10/12/2018 10:21:35
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1 1 
new file mode 100644
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+<img src="vignettes/Gviz.png" align="right" alt="" width="120" />
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+
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+# _Gviz_ - Plotting data and annotation information along genomic coordinates
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+
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+## Software status
6 
+
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+| Travis CI | Bioc ([devel](http://bioconductor.org/packages/devel/bioc/html/Gviz.html)) | Bioc ([release](http://bioconductor.org/packages/release/bioc/html/Gviz.html)) | Coverage |
8 
+|:---------:|:--------------:|:----------------:|:--------:|
9 
+| [![Travis CI status](https://travis-ci.org/ivanek/Gviz.svg?branch=master)](https://travis-ci.org/ivanek/Gviz) | [![Bioconductor-devel Build Status](http://bioconductor.org/shields/build/devel/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) | [![Bioconductor-release Build Status](http://bioconductor.org/shields/build/release/bioc/Gviz.svg)](http://bioconductor.org/checkResults/release/bioc-LATEST/Gviz) |          |
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+
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+## Authors
12 
+
13 
+- Florian Hahne
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+- Steffen Durinck
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+- Robert Ivanek
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+- Arne Mueller
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+- Steve Lianoglou
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+- Ge Tan
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+- Lance Parsons
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+- Shraddha Pai
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+
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+## Overview
23 
+
24 
+Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the `biomaRt` and the `rtracklayer` packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.
25 
+
26 
+## Citation
27 
+
28 
+- Hahne F, Ivanek R (2016). "Statistical Genomics: Methods and Protocols." In Mathé E, Davis S (eds.), chapter Visualizing Genomic Data Using Gviz and Bioconductor, 335–351. Springer New York, New York, NY. ISBN 978-1-4939-3578-9, doi: [10.1007/978-1-4939-3578-9_16](http://dx.doi.org/10.1007/978-1-4939-3578-9_16).