...
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...
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@@ -983,7 +983,7 @@
|
983
|
983
|
blist.conf <- if (notch) {
|
984
|
984
|
t(vapply(blist, "[[", "conf", FUN.VALUE = numeric(2L)))
|
985
|
985
|
} else {
|
986
|
|
- t(blist.stats[, c(2, 4), drop = FALSE])
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|
986
|
+ blist.stats[, c(2, 4), drop = FALSE]
|
987
|
987
|
}
|
988
|
988
|
ybnd <- cbind(
|
989
|
989
|
blist.stats[, 3], blist.conf[, 2], blist.stats[, 4], blist.stats[, 4], blist.conf[, 2],
|
...
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...
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@@ -3094,10 +3094,7 @@ availableDefaultMapping <- function(file, trackType) {
|
3094
|
3094
|
|
3095
|
3095
|
# temporary fix for providerVersion
|
3096
|
3096
|
.providerVersion <- function(sequence) {
|
3097
|
|
- genome <- try(providerVersion(sequence), silent=TRUE)
|
3098
|
|
- if (is(genome, "try-error")) {
|
3099
|
|
- genome <- metadata(sequence)$genome
|
3100
|
|
- }
|
|
3097
|
+ genome <- metadata(sequence)$genome
|
3101
|
3098
|
if (is.null(genome)) {
|
3102
|
3099
|
genome <- NA
|
3103
|
3100
|
}
|