git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Gviz@69402 bc3139a8-67e5-0310-9ffc-ced21a209358
Florian Hahne authored on 13/09/2012 07:54:21
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@@ -1,5 +1,5 @@ |
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Package: Gviz |
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-Version: 1.1.16 |
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+Version: 1.1.17 |
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Title: Plotting data and annotation information along genomic coordinates |
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Author: Florian Hahne, Steffen Durinck, Robert Ivanek, Arne Mueller, Steve Lianoglou> |
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Maintainer: Florian Hahne <florian.hahne@novartis.com> |
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@@ -360,6 +360,7 @@ setMethod("identifier", "AnnotationTrack", function(GdObject, lowest=FALSE, add.
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setMethod("identifier", "GeneRegionTrack", function(GdObject, lowest=FALSE, add.space=FALSE){
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id <- if(lowest) exon(GdObject) else if(.dpOrDefault(GdObject, "geneSymbols", TRUE)){
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symbol(GdObject)} else gene(GdObject) |
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+ id[is.na(id)] <- "NA" |
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if(!lowest && add.space && .dpOrDefault(GdObject, ".__hasAnno", TRUE)) |
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id[id!=""] <- paste(id[id!=""], " ", sep="") |
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return(id) |