Package: Glimma
Type: Package
Title: Interactive visualizations for gene expression analysis
Version: 2.13.0
Authors@R: 
    c(
        person(
            "Shian", "Su",
            role = c("aut", "cre"),
            email = "su.s@wehi.edu.au"
        ),
        person(
            "Hasaru", "Kariyawasam",
            role = c("aut")
        ),
        person(
            "Oliver", "Voogd",
            role = c("aut")
        ),
        person(
            "Matthew", "Ritchie",
            role = c("aut")
        ),
        person(
            "Charity", "Law",
            role = c("aut")
        ),
        person(
            "Stuart", "Lee",
            role = c("ctb")
        ),
        person(
            "Isaac", "Virshup",
            role = c("ctb")
        )
    )
Description: This package produces interactive visualizations for RNA-seq data analysis, utilizing output from limma, edgeR, or DESeq2. It produces interactive htmlwidgets versions of popular RNA-seq analysis plots to enhance the exploration of analysis results by overlaying interactive features. The plots can be viewed in a web browser or embedded in notebook documents.
Encoding: UTF-8
RoxygenNote: 7.1.1
biocViews:
    DifferentialExpression,
    GeneExpression,
    Microarray,
    ReportWriting,
    RNASeq,
    Sequencing,
    Visualization
Depends:
    R (>= 4.0.0)
Imports:
    htmlwidgets,
    edgeR,
    DESeq2,
    limma,
    SummarizedExperiment,
    stats,
    jsonlite,
    methods,
    S4Vectors
Suggests:
    testthat,
    knitr,
    rmarkdown,
    BiocStyle,
    IRanges,
    GenomicRanges,
    pryr,
    AnnotationHub,
    scRNAseq,
    scater,
    scran
License: GPL-3
URL: https://github.com/hasaru-k/GlimmaV2
BugReports: https://github.com/hasaru-k/GlimmaV2/issues
VignetteBuilder: knitr