ed733f5 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:34:04 -0400;
4f4ff12 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2023-10-24 11:34:04 -0400;
33a7a35 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 11:30:26 -0400;
6f31509 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <jwokaty@users.noreply.github.com>2023-04-25 11:30:26 -0400;
5182153 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:25:07 -0400;
6829058 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <jennifer.wokaty@sph.cuny.edu>2022-11-01 11:25:07 -0400;
23c247d version bump by
Sehyun Oh <shbrief@hotmail.com>2022-09-28 09:33:27 -0400;
0cca582 remove the wrong extention in the citation file by
Sehyun Oh <shbrief@hotmail.com>2022-09-28 09:33:00 -0400;
ad6f237 version bump by
Sehyun Oh <shbrief@hotmail.com>2022-09-21 09:44:31 -0400;
902d791 check dataset matching by
Sehyun Oh <shbrief@hotmail.com>2022-09-21 09:11:39 -0400;
28e740c Merge branch 'master' of https://github.com/shbrief/PCAGenomicSignatures by
Sehyun Oh <shbrief@hotmail.com>2022-09-21 09:04:02 -0400;
6a8c86f add citation by
Sehyun Oh <shbrief@hotmail.com>2022-09-21 09:02:51 -0400;
c4299da Merge pull request <a href="#25">#25</a> from lwaldron/patch-1 by
Sehyun Oh <shbrief@hotmail.com>2022-08-23 15:06:22 -0400;
967dbcb Merge pull request <a href="#26">#26</a> from lwaldron/patch-2 by
Sehyun Oh <shbrief@hotmail.com>2022-08-23 15:04:55 -0400;
ad11598 links to other relevant code by
Levi Waldron <lwaldron.research@gmail.com>2022-08-23 11:14:18 +0200;
9a49a8c Add citation and links to vignette by
Levi Waldron <lwaldron.research@gmail.com>2022-08-23 11:08:52 +0200;
d6f53a4 reformatting README by
Sehyun Oh <shbrief@hotmail.com>2022-07-26 22:15:54 -0400;
573f176 miniRAVmodel building script by
Sehyun Oh <shbrief@hotmail.com>2022-07-26 22:01:35 -0400;
686e87c version bump + add missing dependency by
Sehyun Oh <shbrief@hotmail.com>2022-07-26 19:28:57 -0400;
d33811f Update documentation (no major changes) by
Sehyun Oh <shbrief@hotmail.com>2022-07-26 19:21:53 -0400;
52a5bdb version bump by
Sehyun Oh <shbrief@hotmail.com>2022-07-26 19:18:32 -0400;
dd1abeb Dimension reduction using irlba by
Sehyun Oh <shbrief@hotmail.com>2022-07-26 19:16:54 -0400;
79fc702 Documentation update by
Sehyun Oh <shbrief@hotmail.com>2022-07-21 10:17:33 -0400;
2730387 Clean-up rowNorm by
Sehyun Oh <shbrief@hotmail.com>2022-06-28 16:25:50 -0400;
3671fe7 remove rowNorm by
Sehyun Oh <shbrief@hotmail.com>2022-06-28 11:44:06 -0400;
1a67d7f remove rowNorm function by
Sehyun Oh <shbrief@hotmail.com>2022-06-28 11:16:58 -0400;
941981c remove rowNorm examples by
Sehyun Oh <shbrief@hotmail.com>2022-06-28 10:37:54 -0400;
fe178d3 Merge pull request <a href="#20">#20</a> from lwaldron/master by
Sehyun Oh <shbrief@hotmail.com>2022-06-28 01:12:38 -0400;
1d81945 Don't export rowNorm function. by
lwaldron <lwaldron.research@gmail.com>2022-06-24 09:02:48 -0400;
313b409 Clarify that RNA-seq counts should be log-transformed. by
lwaldron <lwaldron.research@gmail.com>2022-06-24 09:02:33 -0400;
ce4be88 minor clarifications to ?annotatePC by
lwaldron <lwaldron.research@gmail.com>2022-06-24 08:54:51 -0400;
17caf3d Previously unincluded roxygen product by
lwaldron <lwaldron.research@gmail.com>2022-06-24 08:54:38 -0400;
7d65b98 version bump by
Sehyun Oh <shbrief@hotmail.com>2022-05-27 13:21:38 -0400;
23ac8b7 debug: fix the PCAGenomicSignatures constructor function by
Sehyun Oh <shbrief@hotmail.com>2022-05-27 13:21:26 -0400;
cb8d6c0 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 16:16:25 +0000;
56c08bb (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2022-04-26 16:16:25 +0000;
08d0db3 news + version bump by
Sehyun Oh <shbrief@hotmail.com>2022-04-20 22:26:11 -0400;
eaaed3b pkgdown reference update by
Sehyun Oh <shbrief@hotmail.com>2022-03-17 18:27:36 -0400;
e4c0c1e minor documentation update by
Sehyun Oh <shbrief@hotmail.com>2022-03-17 18:27:18 -0400;
b5560d2 minor bug fix by
Sehyun Oh <shbrief@hotmail.com>2022-03-17 18:25:32 -0400;
ca5156b version bump by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:51:47 -0500;
19a7a44 fix the file name by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:51:01 -0500;
7876b74 version bump by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:22:06 -0500;
76d1344 update R dependency version by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:21:14 -0500;
35fba36 major: new 'version' argument for 'getModel' function by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:19:30 -0500;
8c5e092 major: different versions of RAVmodels by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:15:54 -0500;
6d82fd0 fix the wrong input in the examples by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:14:12 -0500;
1d69241 update unit tests by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 16:11:32 -0500;
87688d8 minor: documentation update by
Sehyun Oh <shbrief@hotmail.com>2022-03-09 11:37:42 -0500;
c3ecbad test data by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 23:06:42 -0500;
e1c5eab version bump by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 21:09:11 -0500;
e340b5b unit test update by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 21:02:08 -0500;
988d616 updates with filtering messages. unstable by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 20:28:09 -0500;
1e44350 Merge pull request <a href="#16">#16</a> from shbrief/beta by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 19:04:23 -0500;
b6f51bc update documentation by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 19:03:44 -0500;
b46fda2 ignore files by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:35:41 -0500;
eff6be6 unit tests by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:35:01 -0500;
204d059 update with new required parameter by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:34:28 -0500;
9af8bbd move to GenomicSuperSignaturePaper repo by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:33:05 -0500;
d18f671 updated miniRAVmodel by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:31:00 -0500;
b3bc5f4 new functions by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:06:09 -0500;
5957ed3 functions with the new parameter, filterMessage by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:05:39 -0500;
283efaf add RAV filter list by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 11:02:59 -0500;
db97ea0 RAV filtering message and incorporating CRCOV studyMeta by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 10:55:00 -0500;
47d27fe incorporate CRCOV studyMeta by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 10:51:59 -0500;
aaa1801 incorporate CRCOV studyMeta by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 10:39:38 -0500;
e97d552 rename knolwedge graph by
Sehyun Oh <shbrief@hotmail.com>2022-02-13 10:36:04 -0500;
b0852c5 version bump by
Sehyun Oh <shbrief@hotmail.com>2022-01-24 15:14:06 -0500;
15d4d39 new functions to extract basic metadata of study and RAV by
Sehyun Oh <shbrief@hotmail.com>2022-01-24 15:10:33 -0500;
212c6f3 subsetEnrichedPathways function returns NES by
Sehyun Oh <shbrief@hotmail.com>2022-01-24 15:04:58 -0500;
4ce674d cleaning some accessory scripts by
Sehyun Oh <shbrief@hotmail.com>2021-12-16 16:58:11 -0500;
e88625b (origin/RELEASE_3_14, RELEASE_3_14) version bump by
Sehyun Oh <shbrief@hotmail.com>2021-12-15 23:43:22 -0500;
e144c32 minor: update the constructor by
Sehyun Oh <shbrief@hotmail.com>2021-12-07 18:01:30 -0500;
b4840c9 Merge pull request <a href="#14">#14</a> from blankenberg/galaxy by
Sehyun Oh <shbrief@hotmail.com>2021-12-02 22:22:51 -0500;
ceef387 add intermediates_dir and knit_root_dir set to . by
Daniel Blankenberg <dan.blankenberg@gmail.com>2021-12-02 13:34:22 -0500;
7733bf4 Fix gss.Rmd to use params$ to access parameterized values. Add some input path and output file options. Some lintr. by
Daniel Blankenberg <dan.blankenberg@gmail.com>2021-12-01 10:31:06 -0500;
c2f54c1 blement RAV by
Sehyun Oh <shbrief@hotmail.com>2021-11-30 23:53:26 -0500;
550a969 GSS command line tool for Galaxy by
Sehyun Oh <shbrief@hotmail.com>2021-11-22 15:30:52 -0500;
9f8ed81 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 17:10:30 +0000;
5405e48 bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <nitesh.turaga@gmail.com>2021-10-26 17:10:30 +0000;
a8ee901 version bump by
Sehyun Oh <shbrief@hotmail.com>2021-10-21 11:49:05 -0400;
a550583 NEWS for version 1.2.0 by
Sehyun Oh <shbrief@hotmail.com>2021-10-17 23:04:51 -0400;
6a0ef96 version bump by
Sehyun Oh <shbrief@hotmail.com>2021-08-25 20:22:46 -0400;
7925f06 minor: update vignette with the new argument by
Sehyun Oh <shbrief@hotmail.com>2021-08-25 20:21:13 -0400;
c0ce9a2 collate error fix by
Sehyun Oh <shbrief@hotmail.com>2021-07-20 15:13:39 -0400;
901e5bc verson bump by
Sehyun Oh <shbrief@hotmail.com>2021-07-20 14:20:09 -0400;
f8102c5 Merge pull request <a href="#12">#12</a> from shbrief/func_updates by
Sehyun Oh <shbrief@hotmail.com>2021-07-20 14:10:39 -0400;
04148c1 update droplist by
Sehyun Oh <shbrief@hotmail.com>2021-07-17 17:49:26 -0400;
58a2182 minor documentation update by
Sehyun Oh <shbrief@hotmail.com>2021-07-17 17:48:17 -0400;
359f462 rename file by
Sehyun Oh <shbrief@hotmail.com>2021-06-20 00:45:43 -0400;
f1bd7ca add/update unit test by
Sehyun Oh <shbrief@hotmail.com>2021-06-16 23:11:46 -0400;
2443b31 check the validity of multiple indexes by
Sehyun Oh <shbrief@hotmail.com>2021-06-16 23:10:55 -0400;
