Package: GenomicInteractionNodes
Type: Package
Version: 1.7.0
Title: A R/Bioconductor package to detect the interaction nodes from
       HiC/HiChIP/HiCAR data
Authors@R: c(person(given="Jianhong", family="Ou", email="jianhong.ou@duke.edu", 
        role=c("aut", "cre")),
        person(given="Yarui", family="Diao", role="fnd"))
Description: The GenomicInteractionNodes package can import interactions from
        bedpe file and define the interaction nodes, the genomic interaction
        sites with multiple interaction loops.
        The interaction nodes is a binding platform regulates one or multiple
        genes. The detected interaction nodes will be annotated for downstream
        validation.
License: file LICENSE
Depends: R (>= 4.2.0), stats
Imports: AnnotationDbi, graph, GO.db, 
        GenomicRanges, GenomicFeatures, GenomeInfoDb,
        methods,
        IRanges,
        RBGL,
        S4Vectors
Suggests: RUnit, BiocStyle, knitr, rmarkdown, rtracklayer, testthat,
        TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db
URL: https://github.com/jianhong/GenomicInteractionNodes
BugReports: https://github.com/jianhong/GenomicInteractionNodes/issues
biocViews: HiC, Sequencing, Software 
VignetteBuilder: knitr
RoxygenNote: 7.1.2
Encoding: UTF-8