| Master | Dev |
|--------|-----|
|[](https://travis-ci.org/databio/GenomicDistributions) | [](https://travis-ci.org/databio/GenomicDistributions) |
# GenomicDistributions
An R package that provides functions for 1) calculating and 2) visualizing a variety of statistics for a collection of genomic ranges. If you have a set of genomic ranges, such as a BED file the GenomicDistributions R package can help you to explore, annotate, visualize,and compare it.
## Installing
### Main package
With Bioconductor:
```r
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicDistributions")
```
Or from GitHub:
```r
devtools::install_github("databio/GenomicDistributions")
```
### Data package
[GenomicDistributionsData](https://github.com/databio/GenomicDistributionsData): includes full data files, too large to include in GenomicDistributions
## Quick start
See the vignettes for more information: http://code.databio.org/GenomicDistributions
## Building long vignettes
In the [long_vignettes](/long_vignettes) are vignettes that require large external data and take a long time to run. Therefore, they should be pre-built. You can render them manually by running [long_vignettes/render-long-vignettes.R](long_vignettes/render-long-vignettes.R). This will use `knitr` to run the vignette and put the result into the `vignettes` folder, along with output figures.
