Bioconductor Code: Browse

Graph of GenomicDataCommons

174424a (origin/RELEASE_3_17, RELEASE_3_17) version bump 1.24.2 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-25 08:58:17 -0400;
eb1575e keep legacy and set to FALSE for now by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-25 08:56:10 -0400;
007c291 (HEAD -> devel, origin/master, origin/devel, origin/HEAD) version bump 1.25.2 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-25 08:56:22 -0400;
9df3d91 keep legacy and set to FALSE for now by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-25 08:56:10 -0400;
31702e5 version bump 1.25.1 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-24 12:58:14 -0400;
5c111a8 use application/json in Accept header by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 17:37:04 -0400;
8405b53 specify package in fromJSON call by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 17:35:01 -0400;
38258b7 unlink after unit tests by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 17:31:24 -0400;
9222546 version bump 1.24.1 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 17:15:24 -0400;
30894f9 update NEWS by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 15:27:47 -0400;
e40f0b2 deprecate legacy endpoint and argument by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 15:27:15 -0400;
48ca02a update NEWS by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 15:27:47 -0400;
6c8d2b4 deprecate legacy endpoint and argument by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-05-17 15:27:15 -0400;
36a20cc bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:53:27 -0400;
7be4531 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <jwokaty@users.noreply.github.com> 2023-04-25 10:53:27 -0400;
8fb018d version bump 1.23.5 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-21 13:50:08 -0400;
ed9108d update NEWS by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-21 13:50:01 -0400;
bd48c6b (origin/RELEASE_3_16, RELEASE_3_16) version bump 1.22.3 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-10 10:53:00 -0400;
6c73d4f fix test for multiple results per ID by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-10 10:51:10 -0400;
2f07bb9 version bump 1.23.4 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-10 10:51:20 -0400;
9e3eef2 fix test for multiple results per ID by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-10 10:51:10 -0400;
44ddd02 version bump 1.22.2 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-03 14:42:17 -0400;
79b503e get the first and oncoplot by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-03 14:39:28 -0400;
0dddc11 version bump 1.23.3 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-03 14:39:58 -0400;
9695bae use native pipe by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-03 14:39:51 -0400;
f93b79b get the first and oncoplot by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-04-03 14:39:28 -0400;
d4e5c3b version bump 1.22.1 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-01-30 13:00:54 -0500;
9d8b882 update NEWS by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-01-30 12:51:30 -0500;
b360ef4 set NULL results to empty data.frame for type conversion, closes <a href="#109">#109</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-01-30 12:46:54 -0500;
e0e9824 bump version 1.23.2 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-01-30 12:51:38 -0500;
bda77e2 update NEWS by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-01-30 12:51:30 -0500;
db343c0 set NULL results to empty data.frame for type conversion, closes <a href="#109">#109</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2023-01-30 12:46:54 -0500;
b32e626 version bump 1.23.1 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-12-08 17:23:54 +0000;
d5e5add update token auth URL by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-12-08 15:27:16 +0000;
20c9275 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:28 -0400;
4512ce8 bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <jennifer.wokaty@sph.cuny.edu> 2022-11-01 11:15:28 -0400;
7440323 (origin/RELEASE_3_15, RELEASE_3_15) version bump 1.20.3 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-10-07 12:53:21 -0400;
203120c restrict to open access datasets in qfiles query by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-10-07 16:27:13 +0000;
fe31922 version bump 1.21.5 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-10-07 16:27:39 +0000;
392b946 restrict to open access datasets in qfiles query by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-10-07 16:27:13 +0000;
d55f82c version bump 1.21.4 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-26 08:57:44 -0400;
0619d16 bug fix: use names instead of indices in gdcdata by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-26 08:57:15 -0400;
b158821 version bump 1.21.3 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-22 16:01:16 -0400;
0390796 update .gitignore to include all *_cache folders and *.html products by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-22 15:52:32 -0400;
90837f7 update README.Rmd and README.md by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-22 15:52:04 -0400;
89691e0 update .gdc_post using fromJSON until return_type is fixed by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-22 15:51:10 -0400;
b879f63 version bump 1.20.2 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-09 10:38:12 -0400;
d5e764b add nasty hack to circumvent full table response from API, refers to <a href="#105">#105</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-02 15:21:02 -0400;
bcb3bc3 version bump 1.21.2 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-02 15:45:16 -0400;
351910a update roxygen version by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-02 15:21:24 -0400;
44e8d37 add nasty hack to circumvent full table response from API, refers to <a href="#105">#105</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-08-02 15:21:02 -0400;
32eb393 update urls for pkgdown by Sean Davis <seandavi@gmail.com> 2022-04-27 19:06:37 -0600;
8629ace adding pkgdown by Sean Davis <seandavi@gmail.com> 2022-04-27 19:04:58 -0600;
d1fb348 remove devel checks for the time being by Sean Davis <seandavi@gmail.com> 2022-04-27 16:25:04 -0600;
21b1c6a Merge branch 'master' into RELEASE_3_15 by Sean Davis <seandavi@gmail.com> 2022-04-27 16:03:47 -0600;
2f1cfa8 ignore gdc_client-requiring code to avoid errors by Sean Davis <seandavi@gmail.com> 2022-04-27 16:02:54 -0600;
b43b849 merge changes by Sean Davis <seandavi@gmail.com> 2022-04-27 13:46:15 -0600;
b368ff4 Merge new changes by Sean Davis <seandavi@gmail.com> 2022-04-27 13:44:55 -0600;
0754f9d merge new changes by Sean Davis <seandavi@gmail.com> 2022-04-27 13:43:43 -0600;
a42ecd8 version bump by Sean Davis <seandavi@gmail.com> 2022-04-27 13:40:12 -0600;
006e8a5 Version bump by Sean Davis <seandavi@gmail.com> 2022-04-27 13:39:26 -0600;
9900c07 Merge branch 'RELEASE_3_15' by Sean Davis <seandavi@gmail.com> 2022-04-27 13:38:36 -0600;
2f68a6b Replace HTSeq with STAR throughout by Sean Davis <seandavi@gmail.com> 2022-04-27 13:38:02 -0600;
62d799b catch manifest with no entries (zero results) by Sean Davis <seandavi@gmail.com> 2022-04-27 13:35:41 -0600;
b72aacf DT not working in README.md by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-26 21:50:28 -0400;
705222d version bump 1.20.1 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-26 21:44:10 -0400;
028eed9 replace HTSeq queries with STAR by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-26 21:36:25 -0400;
4d89fcd version bump 1.21.1 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-26 21:42:54 -0400;
d4818c0 evaluate code and modify README.md with inst/script/README.Rmd by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-26 21:42:47 -0400;
56ba1dd Merge branch 'master' of github.com:Bioconductor/GenomicDataCommons by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-26 21:40:38 -0400;
cebd7e2 replace HTSeq queries with STAR by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-26 21:36:25 -0400;
d557ac3 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:40:04 +0000;
ac37d7a bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 15:40:04 +0000;
c648881 version bump 1.19.10 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 10:11:13 -0400;
8ba067f run roxygen and remove arg from doc by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 10:11:02 -0400;
6c89f6d version bump 1.19.9 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 10:06:18 -0400;
ffb020c update NEWS by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 10:06:10 -0400;
45f9f2d document valid_version argument in gdc_client_version by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 10:00:20 -0400;
d1c5e01 resolve check warning unused doc arg by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 09:59:55 -0400;
1601348 Merge remote-tracking branch 'origin/manifest' into mergePRs by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 09:47:39 -0400;
7a4d81e Merge remote-tracking branch 'origin/oncoPrint' into mergePRs by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 09:47:16 -0400;
d50a977 Merge remote-tracking branch 'origin/client-version' into mergePRs by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 09:46:47 -0400;
390650d Merge remote-tracking branch 'origin/missing' into mergePRs by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-22 09:46:29 -0400;
b12d13a SummarizedExperiment and S4Vectors Imports not needed by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-13 17:24:45 -0400;
22109c1 update manifest chunk in overview.Rmd, closes <a href="#100">#100</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-13 16:44:03 -0400;
842e0e7 update example to new field values in files() by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-13 16:12:37 -0400;
5385e77 validate the version of the gdc-client by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-04-05 16:01:04 -0400;
6a48e3c version bump 1.19.8 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-03-05 23:02:13 -0500;
51e1fe7 update BAM slicing docs by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-03-05 23:01:42 -0500;
5d6092c implement is / NOT MISSING in filter by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-02-24 18:17:14 +0000;
24b6862 version bump 1.19.7 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-02-24 18:11:53 +0000;
9c71707 fix check NOTE by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-02-24 18:08:52 +0000;
387e201 version bump 1.19.6 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-02-07 18:45:14 -0500;
cd7ecb5 add legacy method on GDCQuery, closes <a href="#36">#36</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-02-07 18:45:03 -0500;
7f5b24e version bump 1.19.5 by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-02-07 18:04:45 -0500;
932c1bf specify col_types, closes <a href="#92">#92</a> by LiNk-NY <marcel.ramosperez@roswellpark.org> 2022-02-07 18:04:11 -0500;
73b48ff Allow warnings in R CMD Check action by Sean Davis <seandavi@gmail.com> 2022-01-12 09:52:38 -0700;
0b41582 Two more missing suggests.... by Sean Davis <seandavi@gmail.com> 2022-01-12 08:58:23 -0700;
c56ce8a add missing maftools dependency from vignette by Sean Davis <seandavi@gmail.com> 2022-01-12 08:45:54 -0700;
ed197b3 Add the actual github actions workflow by Sean Davis <seandavi@gmail.com> 2022-01-12 08:32:37 -0700;