Graph ofGeneTonic
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  • 19e79ae (origin/RELEASE_3_15, RELEASE_3_15) version bump, 2.0.2 for release bugfix by Federico Marini <marinif@uni-mainz.de> 2022-08-03 10:42:03 +0200;
  • bdd08d7 updated news by Federico Marini <marinif@uni-mainz.de> 2022-08-03 10:37:44 +0200;
  • f7e8a67 fixed the row names on the heatmap, now taking the gene_id column from the anno_df instead of the rownames by Annekathrin Silvia Ludt <annekathrin@zdv-vpn01-38-62.zdv.Uni-Mainz.DE> 2022-08-02 15:32:21 +0200;
  • 2bdf9b4 (HEAD -> master, origin/master, origin/HEAD) Merge pull request <a href="#38">#38</a> from federicomarini/heatmap_fix by Federico Marini <marinif@uni-mainz.de> 2022-08-03 10:38:09 +0200;
  • 4fa283a version bump, 2.1.3 by Federico Marini <marinif@uni-mainz.de> 2022-08-03 10:37:53 +0200;
  • d694bc2 updated news by Federico Marini <marinif@uni-mainz.de> 2022-08-03 10:37:44 +0200;
  • 70c8619 fixed the row names on the heatmap, now taking the gene_id column from the anno_df instead of the rownames by Annekathrin Silvia Ludt <annekathrin@zdv-vpn01-38-62.zdv.Uni-Mainz.DE> 2022-08-02 15:32:21 +0200;
  • 11c851b updated NEWS by Federico Marini <marinif@uni-mainz.de> 2022-06-10 16:22:06 +0200;
  • 6d01cdf updated NEWS by Federico Marini <marinif@uni-mainz.de> 2022-06-10 16:22:06 +0200;
  • e3c9ea0 Version bump, 2.0.1 by Federico Marini <marinif@uni-mainz.de> 2022-06-10 16:20:53 +0200;
  • f4fda95 updating citation(s) for the package by Federico Marini <marinif@uni-mainz.de> 2022-05-01 10:57:49 +0200;
  • f6814b3 fixing the usage of reactive element after aggregating the scores on the fly by Federico Marini <marinif@uni-mainz.de> 2022-05-19 19:50:05 +0200;
  • 2e2b98a Merge pull request <a href="#36">#36</a> from federicomarini/reacto_fix by Federico Marini <marinif@uni-mainz.de> 2022-05-27 16:08:38 +0200;
  • a6b0f49 update gh actions by Federico Marini <marinif@uni-mainz.de> 2022-05-27 16:08:07 +0200;
  • d14e3c1 Merge pull request <a href="#35">#35</a> from federicomarini/reacto_fix by Federico Marini <marinif@uni-mainz.de> 2022-05-27 16:07:35 +0200;
  • b42640a updating gh actions to use Mike's with specific Bioc versioning by Federico Marini <marinif@uni-mainz.de> 2022-05-27 15:16:01 +0200;
  • 7fbd484 version bump, 2.1.2 by Federico Marini <marinif@uni-mainz.de> 2022-05-19 20:15:24 +0200;
  • f5953af updating roxygen version number, while we are at it by Federico Marini <marinif@uni-mainz.de> 2022-05-19 19:53:36 +0200;
  • f1cc8fe fixing the usage of reactive element after aggregating the scores on the fly by Federico Marini <marinif@uni-mainz.de> 2022-05-19 19:50:05 +0200;
  • bf4969a version bump, 2.1.1 by Federico Marini <marinif@uni-mainz.de> 2022-05-01 10:59:16 +0200;
  • c192ce4 updating citation(s) for the package by Federico Marini <marinif@uni-mainz.de> 2022-05-01 10:57:49 +0200;
  • 29295b2 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:02:24 +0000;
  • f15fe5f bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <nitesh.turaga@gmail.com> 2022-04-26 16:02:24 +0000;
  • ca561a1 Merge pull request <a href="#28">#28</a> from federicomarini/gtl_at_runtime by Federico Marini <marinif@uni-mainz.de> 2022-04-06 13:18:23 +0200;
  • 69b94e9 version bump, 1.99.3 by Federico Marini <marinif@uni-mainz.de> 2022-04-06 13:04:19 +0200;
  • bac708b fixing typo and re-rendering manpages by Federico Marini <marinif@uni-mainz.de> 2022-04-06 12:07:44 +0200;
  • 0204ac2 updated news by Federico Marini <marinif@uni-mainz.de> 2022-04-06 12:07:19 +0200;
  • be6f118 Version bump, 1.99.2 by Federico Marini <marinif@uni-mainz.de> 2022-04-04 17:26:14 +0200;
  • aeb61f0 expanding tour about GeneSpector component by Federico Marini <marinif@uni-mainz.de> 2022-04-04 17:22:17 +0200;
  • adc0b0a additional content about the upload functionality in the vignette by Federico Marini <marinif@uni-mainz.de> 2022-04-04 17:11:05 +0200;
  • 7e7ee14 adding specific example for GeneTonic run without input data by Federico Marini <marinif@uni-mainz.de> 2022-04-04 17:10:48 +0200;
  • df4db08 fixing the help for gtl upload by Federico Marini <marinif@uni-mainz.de> 2022-04-04 17:10:31 +0200;
  • 61fff72 rerendered manpage by Federico Marini <marinif@uni-mainz.de> 2022-03-30 15:00:58 +0200;
  • 3f88564 one round of styler on recent R source files by Federico Marini <marinif@uni-mainz.de> 2022-03-30 15:00:28 +0200;
  • ada1cfb Version bump, 1.99.1 by Federico Marini <marinif@uni-mainz.de> 2022-03-30 12:16:01 +0200;
  • 96def07 updated NEWS.md by Federico Marini <marinif@uni-mainz.de> 2022-03-30 12:15:50 +0200;
  • 76862dc Merge pull request <a href="#33">#33</a> from federicomarini/gsupset by Federico Marini <marinif@uni-mainz.de> 2022-03-30 12:11:52 +0200;
  • 20e8261 fixing example by Federico Marini <marinif@uni-mainz.de> 2022-03-30 12:11:00 +0200;
  • ee5589f Merge pull request <a href="#32">#32</a> from federicomarini/gsupset by Federico Marini <marinif@uni-mainz.de> 2022-03-30 12:05:07 +0200;
  • 77da2f0 full suite of unit tests for the gs_upset functionality by Federico Marini <marinif@uni-mainz.de> 2022-03-30 11:58:59 +0200;
  • b14ee13 updated testing setup by Federico Marini <marinif@uni-mainz.de> 2022-03-30 11:58:40 +0200;
  • 1971f76 added manpages for upset related functionality by Federico Marini <marinif@uni-mainz.de> 2022-03-30 11:58:28 +0200;
  • 9d5079e added functionality to plot geneset upset plots by Federico Marini <marinif@uni-mainz.de> 2022-03-30 11:58:00 +0200;
  • e734002 updated news by Federico Marini <marinif@uni-mainz.de> 2022-03-29 12:55:58 +0200;
  • 3a5df49 Version bump, 1.99.0 by Federico Marini <marinif@uni-mainz.de> 2022-03-28 17:42:56 +0200;
  • 826e602 Updated news by Federico Marini <marinif@uni-mainz.de> 2022-03-28 17:42:41 +0200;
  • d71f130 Merge branch 'gtl_at_runtime' of github.com:federicomarini/GeneTonic into gtl_at_runtime by Federico Marini <marinif@uni-mainz.de> 2022-03-28 16:52:36 +0200;
  • b607442 Completing text section for the help in the data upload section by Federico Marini <marinif@uni-mainz.de> 2022-03-28 16:52:18 +0200;
  • 1afd76c adding vignette screenshot by Federico Marini <marinif@uni-mainz.de> 2022-03-28 16:51:55 +0200;
  • e72944b Adding sections in the vignette for describing the new functionality by Federico Marini <marinif@uni-mainz.de> 2022-03-28 16:51:25 +0200;
  • 54c36d4 tweaking the UI for the upload section by Federico Marini <marinif@uni-mainz.de> 2022-03-28 16:50:45 +0200;
  • 6d4933b rerendering manpages and namespace by Federico Marini <marinif@uni-mainz.de> 2022-03-28 15:30:11 +0200;
  • d35ee64 replacing occurrencies of GeneTonic_list with the newer GeneTonicList by Federico Marini <marinif@uni-mainz.de> 2022-03-28 12:43:21 +0200;
  • a20b7df adding synonim creator function for the GeneTonicList objects, keeping older one for backwards compatibility by Federico Marini <marinif@uni-mainz.de> 2022-03-28 12:42:30 +0200;
  • 9655f8b Merge pull request <a href="#31">#31</a> from federicomarini/upload_checked by Federico Marini <marinif@uni-mainz.de> 2022-03-26 01:23:54 +0100;
  • c9ee95b (origin/RELEASE_3_14, RELEASE_3_14) Version bump, 1.6.4 by Federico Marini <marinif@uni-mainz.de> 2022-03-24 13:30:47 +0100;
  • 9b0a76c Rerendering manpages and namespace by Federico Marini <marinif@uni-mainz.de> 2022-03-24 13:30:18 +0100;
  • 7e4fbe3 Version bump, 1.6.4 by Federico Marini <marinif@uni-mainz.de> 2022-03-24 12:40:24 +0100;
  • 4e7c769 backbone functions update - hyperg replaced by fixedrow by Federico Marini <marinif@uni-mainz.de> 2022-01-19 17:22:34 +0100;
  • c0da0b9 handling the check of having data uploaded in the current format, via tryCatch for the readRDS ingestion by Federico Marini <marinif@uni-mainz.de> 2022-03-22 15:12:48 +0100;
  • 6849b32 Merge branch 'master' into gtl_at_runtime by Federico Marini <marinif@uni-mainz.de> 2022-03-22 00:16:21 +0100;
  • 9ed4732 version bump, 1.7.4 by Federico Marini <marinif@uni-mainz.de> 2022-03-22 00:12:32 +0100;
  • c561895 Version bump, 1.6.2 by Federico Marini <marinif@uni-mainz.de> 2022-03-22 00:11:06 +0100;
  • f23a675 adjusting calls to funcs of backbone, adapting to recent code changes/param renaming by Federico Marini <marinif@uni-mainz.de> 2022-03-22 00:05:01 +0100;
  • 82e0844 Merge pull request <a href="#30">#30</a> from federicomarini/bb_newparamname by Federico Marini <marinif@uni-mainz.de> 2022-03-22 00:06:28 +0100;
  • aed4196 adjusting calls to funcs of backbone, adapting to recent code changes/param renaming by Federico Marini <marinif@uni-mainz.de> 2022-03-22 00:05:01 +0100;
  • 68e6007 Adding some content to the template report for happy_hour. While we are at it, adding citation info. by Federico Marini <marinif@uni-mainz.de> 2022-02-08 11:21:40 +0100;
  • 7583ce1 adding message to simplify retrieval of report created with happy_hour - if on batch, no location was returned (visibly) by Federico Marini <marinif@uni-mainz.de> 2022-02-08 11:20:47 +0100;
  • fd6519b adjusting the recipe to read in correctly the experimental condition of interest - especially if not specified in the app by Federico Marini <marinif@uni-mainz.de> 2022-02-03 17:55:29 +0100;
  • 802aad3 improving the content of the cocktail recipe for the happy_hour function by Federico Marini <marinif@uni-mainz.de> 2022-02-03 17:30:35 +0100;
  • ddc7c55 rendering manpages for happy_hour by Federico Marini <marinif@uni-mainz.de> 2022-02-03 17:29:39 +0100;
  • ed58ab3 adding mygroup parameter to happy_hour by Federico Marini <marinif@uni-mainz.de> 2022-02-03 17:29:28 +0100;
  • 0fe11fa genespector has some better checks, first on gene and then on experimental conditions by Federico Marini <marinif@uni-mainz.de> 2022-01-31 13:26:09 +0100;
  • 5ef7f77 simple genespector implementation, with selectize input choices populated on the server side to speed operations up by Federico Marini <marinif@uni-mainz.de> 2022-01-29 23:26:29 +0100;
  • 81909cf making space for the GeneSpector by Federico Marini <marinif@uni-mainz.de> 2022-01-29 23:24:09 +0100;
  • 3e737eb * upload buttons gain an icon * added functionality to reset gene and geneset bookmarks by Federico Marini <marinif@uni-mainz.de> 2022-01-27 19:51:54 +0100;
  • 3cc71fe bookmarks updated over switching to different gtl objects, so that common features can be kept noted by Federico Marini <marinif@uni-mainz.de> 2022-01-27 17:44:10 +0100;
  • 702f014 testing the split&sanitize function by Federico Marini <marinif@uni-mainz.de> 2022-01-27 16:27:16 +0100;
  • 1768b24 some more examples for the bookmark entering by Federico Marini <marinif@uni-mainz.de> 2022-01-27 16:27:01 +0100;
  • 8e04f23 renaming function to split and sanitize editor content, and adding documentation by Federico Marini <marinif@uni-mainz.de> 2022-01-27 16:26:22 +0100;
  • 36d10b3 rerendering namespace by Federico Marini <marinif@uni-mainz.de> 2022-01-27 16:25:43 +0100;
  • 0982f65 fixing namespace by Federico Marini <marinif@uni-mainz.de> 2022-01-27 16:25:36 +0100;
  • 31c9f3c porting rescue mechanism for the geneset bookmarking system by Federico Marini <marinif@uni-mainz.de> 2022-01-27 00:39:06 +0100;
  • cf38804 implementing rescue mechanism if providing gene names by Federico Marini <marinif@uni-mainz.de> 2022-01-27 00:38:21 +0100;
  • 64b1f7e better ui names to describe what one can do from the boxes by Federico Marini <marinif@uni-mainz.de> 2022-01-26 13:25:00 +0100;
  • b9cc0e4 adding functionality to upload genesets to bookmarks, similar to the genes one by Federico Marini <marinif@uni-mainz.de> 2022-01-26 13:06:25 +0100;
  • 72ef62c updating content of the editor to comment out the ones not found, yay by Federico Marini <marinif@uni-mainz.de> 2022-01-26 13:03:56 +0100;
  • e46bf7e Upload possibility for bookmarked genes by Federico Marini <marinif@uni-mainz.de> 2022-01-26 12:08:48 +0100;
  • 13a4649 convert text to names, kindly borrowed from iSEE's internals by Federico Marini <marinif@uni-mainz.de> 2022-01-26 12:07:43 +0100;
  • 71f514c Merge branch 'master' into gtl_at_runtime by Federico Marini <marinif@uni-mainz.de> 2022-01-25 12:16:00 +0100;
  • 853172e resolving some leftover TODOs by Federico Marini <marinif@uni-mainz.de> 2022-01-25 12:05:43 +0100;
  • e457f43 better labels for UI elements/better messages by Federico Marini <marinif@uni-mainz.de> 2022-01-25 12:05:32 +0100;
  • 2e6eaaf removing todos and unused spots by Federico Marini <marinif@uni-mainz.de> 2022-01-25 11:54:10 +0100;
  • e5471b5 using the download button - no need of server logic for the action button by Federico Marini <marinif@uni-mainz.de> 2022-01-25 11:52:36 +0100;
  • e1f4abc adding button to download gtl file by Federico Marini <marinif@uni-mainz.de> 2022-01-25 11:51:35 +0100;
  • 334cc30 Version bump, 1.7.3 by Federico Marini <marinif@uni-mainz.de> 2022-01-24 08:56:46 +0100;
  • 312a3cf re-rendering manpages by Federico Marini <marinif@uni-mainz.de> 2022-01-22 16:05:09 +0100;
  • 9b8ab6b checks for the tab contents by Federico Marini <marinif@uni-mainz.de> 2022-01-22 16:04:21 +0100;
  • 6d14125 objects picked up now as from the reactive_elements list by Federico Marini <marinif@uni-mainz.de> 2022-01-22 15:59:28 +0100;
  • 8b07fe9 gtl upload buildup by Federico Marini <marinif@uni-mainz.de> 2022-01-22 15:45:43 +0100;